2020 |
Lutfiatunnisa,; Widodo, Maheno Sri; Faqih, Abdul Rahem; Sari, Ledi Diana; Valen, Fitri Sil Molecular approach for identification of Asian seabass (Lates calcarifer Bloch 1790) based on COI gene sequence from Java, Indonesia Journal Article In: AACL Bioflux, vol. 13, no. 5, pp. 2828-2833, 2020, ISSN: 1844-8143. @article{Valen2020a,
title = {Molecular approach for identification of Asian seabass (Lates calcarifer Bloch 1790) based on COI gene sequence from Java, Indonesia},
author = {Lutfiatunnisa and Maheno Sri Widodo and Abdul Rahem Faqih and Ledi Diana Sari and Fitri Sil Valen },
url = {http://www.bioflux.com.ro/docs/2020.2445-2451.pdf},
issn = {1844-8143},
year = {2020},
date = {2020-10-24},
journal = {AACL Bioflux},
volume = {13},
number = {5},
pages = {2828-2833},
abstract = {Asian seabass or barramundi in Australia, valid as Lates calcarifer (Bloch 1790) is one of the most important food fishes found in tropical and semi-tropical regions of the Indo-West Pacific. This species has been utilized in aquaculture for the past several decades in many countries including Indonesia. In order to support the species success in aquaculture, it is necessary to conduct some research, one of which is species identification for the initial selection of parent candidates by the molecular approach based on the COI gene sequence using the DNA Barcoding method. The two analyzed specimens of Asian seabass from Java, Indonesia were identical to the Lates calcarifer from Australia, with a matching percentage of about 99.83-100% and with 0.000\textendash0.007 genetic distance. },
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Asian seabass or barramundi in Australia, valid as Lates calcarifer (Bloch 1790) is one of the most important food fishes found in tropical and semi-tropical regions of the Indo-West Pacific. This species has been utilized in aquaculture for the past several decades in many countries including Indonesia. In order to support the species success in aquaculture, it is necessary to conduct some research, one of which is species identification for the initial selection of parent candidates by the molecular approach based on the COI gene sequence using the DNA Barcoding method. The two analyzed specimens of Asian seabass from Java, Indonesia were identical to the Lates calcarifer from Australia, with a matching percentage of about 99.83-100% and with 0.000–0.007 genetic distance. |
Irsyam, Arifin Surya Dwipa; Mustaqim, Wendy A.; Irwanto, Rina Ratnasih Phyllanthus emblica L. Phyllanthaceae Book Chapter In: F., Franco (Ed.): pp. 1-10, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020g,
title = {Phyllanthus emblica L. Phyllanthaceae},
author = {Arifin Surya Dwipa Irsyam and Wendy A. Mustaqim and Rina Ratnasih Irwanto },
editor = {Franco F. },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_210-1},
doi = { https://doi.org/10.1007/978-3-030-14116-5_210-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-10-09},
pages = {1-10},
publisher = {Springer, Cham},
abstract = {Diasperus emblica (L.) Kuntze; Dichelactina nodicaulis Hance; Emblica officinalis Gaertn.; Phyllanthus mairei L\'{e}veill\'{e}},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Diasperus emblica (L.) Kuntze; Dichelactina nodicaulis Hance; Emblica officinalis Gaertn.; Phyllanthus mairei Léveillé |
Irsyam, Arifin Surya Dwipa; Mustaqim, Wendy A.; Irwanto, Rina Ratnasih Xanthosoma sagittifolium (L.) Schott Araceae Book Chapter In: F., Franco (Ed.): pp. 1-6, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{wendy2020i,
title = {Xanthosoma sagittifolium (L.) Schott Araceae},
author = {Arifin Surya Dwipa Irsyam and Wendy A. Mustaqim and Rina Ratnasih Irwanto},
editor = {Franco F. },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_211-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_211-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-10-09},
pages = {1-6},
publisher = {Springer, Cham},
abstract = {Arum sagittifolium L.; Arum xanthorrhizon Jacq.; Caladium belophyllum Willd.; Caladium sagittifolium (L.) Vent; Caladium xanthorrhizon (Jacq.) Willd.; Xanthosoma belophyllum (Willd.) Kunth.; Xanthosoma xanthorrhizon (Jacq.) Koch},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Arum sagittifolium L.; Arum xanthorrhizon Jacq.; Caladium belophyllum Willd.; Caladium sagittifolium (L.) Vent; Caladium xanthorrhizon (Jacq.) Willd.; Xanthosoma belophyllum (Willd.) Kunth.; Xanthosoma xanthorrhizon (Jacq.) Koch |
Mustaqim, Wendy A. Aquilaria malaccensis Lam. Thymelaeaceae Book Chapter In: F., Franco (Ed.): pp. 1-18, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020j,
title = {Aquilaria malaccensis Lam. Thymelaeaceae},
author = {Wendy A. Mustaqim},
editor = {Franco F. },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_169-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_169-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-10-09},
pages = {1-18},
publisher = {Springer, Cham},
abstract = {Agallochum malaccensis (Lam.) O.K.; Agallochum malaicense Rumph.; Agallochum secundarium coinamense Rumph.; Aloexylum agallochum Lour.; Aquillaria agallochum Roxb.; Aquillaria agallocha Roxb. ex DC.; Aquilaria moluccensis Oken; Aquillaria ovata Cav.; Aquilariella malaccensis (Lam.) van Tiegh.; Aquillaria secundaria DC.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Agallochum malaccensis (Lam.) O.K.; Agallochum malaicense Rumph.; Agallochum secundarium coinamense Rumph.; Aloexylum agallochum Lour.; Aquillaria agallochum Roxb.; Aquillaria agallocha Roxb. ex DC.; Aquilaria moluccensis Oken; Aquillaria ovata Cav.; Aquilariella malaccensis (Lam.) van Tiegh.; Aquillaria secundaria DC. |
Yus, Reza Raihandhany; Suwandhi, Ichsan; Nugraha, Dicky; Sidik, Rasyid Kemunculan Berbagai Macam Spesies Permudaan Pohon di Kawasan Wisata Alam Taman Pinus Pangjugjugan, Sumedang Proceedings Pusat Penelitian dan Penerbitan UIN SGD Bandung, 2020, ISBN: 978-623-6946-90-9. @proceedings{Reza2020a,
title = {Kemunculan Berbagai Macam Spesies Permudaan Pohon di Kawasan Wisata Alam Taman Pinus Pangjugjugan, Sumedang},
author = {Reza Raihandhany Yus and Ichsan Suwandhi and Dicky Nugraha and Rasyid Sidik},
isbn = {978-623-6946-90-9},
year = {2020},
date = {2020-10-08},
publisher = {Pusat Penelitian dan Penerbitan UIN SGD Bandung},
abstract = {Kawasan Wisata Alam Taman Pinus Pangjugjugan merupakan salah satu pilihan destinasi wisata yang terdapat di Desa Wisata Alam Pangjugjugan, Kelurahan Cilembu, Kecamatan Pamulihan, Sumedang. Pinus merkusii Jungh et de Vriese merupakan spesies dalam habitus pohon yang mendominasi di Taman Pinus Pangjugjugan beserta sejumlah spesies lainnya dalam habitus perdu dan herba. Selain P. merkusii terdapat pula beberapa spesies pohon lainnya. Setelah dilakukan penjelajahan, ditemukan pula sejumlah permudaan spesies pohon lain yang tumbuh di bawah tegakan pinus. Meskipun serasah P. merkusii menghasilkan alelopati, namun sejumlah permudaan pohon spesies lain dapat tumbuh di Taman Pinus Pangjugjugan. Tujuan dari penelitian ini adalah untuk mendata spesies permudaan pohon di Taman Pinus Pangjugjugan, Kecamatan Pamulihan, Kabupaten Sumedang. Penelitian dilakukan pada bulan Januari 2020 dengan menggunakan metode survei langsung. Permudaan pohon (semai dan pancang) yang dijumpai di kawsan Taman Pinus dicatat nama spesies, nama lokal, dan familinya pada lembar pencatatan lalu diidentifikasi. Berdasarkan hasil survei, ditemukan sebanyak 13 spesies permudaan pohon yang tersebar dalam 11 famili. Spesiesspesies permudaan tersebut antara lain Artocarpus heterophyllus Lam., Breynia cernua (Poir.) M\"{u}ll.Arg., Croton sp., Hibiscus macrophyllus Roxb. ex Hornem., Homalanthus populneus (Geiseler) Pax, Macaranga tanarius (L) M\"{u}ll.Arg., Maesopsis eminii Engl., Mangifera indica L., Melicope sp., Psidium guajava L., Spathodea campanulata P.Beauv., Tectona grandis L.f., Toona sinensis (Juss.) M.Roem. Euphorbiaceae merupakan famili dengan jumlah spesies terbanyak, yaitu 3 spesies. Kata kunci: kemunculan, Pangjugjugan, permudaan pohon, taman pinus},
keywords = {},
pubstate = {published},
tppubtype = {proceedings}
}
Kawasan Wisata Alam Taman Pinus Pangjugjugan merupakan salah satu pilihan destinasi wisata yang terdapat di Desa Wisata Alam Pangjugjugan, Kelurahan Cilembu, Kecamatan Pamulihan, Sumedang. Pinus merkusii Jungh et de Vriese merupakan spesies dalam habitus pohon yang mendominasi di Taman Pinus Pangjugjugan beserta sejumlah spesies lainnya dalam habitus perdu dan herba. Selain P. merkusii terdapat pula beberapa spesies pohon lainnya. Setelah dilakukan penjelajahan, ditemukan pula sejumlah permudaan spesies pohon lain yang tumbuh di bawah tegakan pinus. Meskipun serasah P. merkusii menghasilkan alelopati, namun sejumlah permudaan pohon spesies lain dapat tumbuh di Taman Pinus Pangjugjugan. Tujuan dari penelitian ini adalah untuk mendata spesies permudaan pohon di Taman Pinus Pangjugjugan, Kecamatan Pamulihan, Kabupaten Sumedang. Penelitian dilakukan pada bulan Januari 2020 dengan menggunakan metode survei langsung. Permudaan pohon (semai dan pancang) yang dijumpai di kawsan Taman Pinus dicatat nama spesies, nama lokal, dan familinya pada lembar pencatatan lalu diidentifikasi. Berdasarkan hasil survei, ditemukan sebanyak 13 spesies permudaan pohon yang tersebar dalam 11 famili. Spesiesspesies permudaan tersebut antara lain Artocarpus heterophyllus Lam., Breynia cernua (Poir.) Müll.Arg., Croton sp., Hibiscus macrophyllus Roxb. ex Hornem., Homalanthus populneus (Geiseler) Pax, Macaranga tanarius (L) Müll.Arg., Maesopsis eminii Engl., Mangifera indica L., Melicope sp., Psidium guajava L., Spathodea campanulata P.Beauv., Tectona grandis L.f., Toona sinensis (Juss.) M.Roem. Euphorbiaceae merupakan famili dengan jumlah spesies terbanyak, yaitu 3 spesies. Kata kunci: kemunculan, Pangjugjugan, permudaan pohon, taman pinus |
Wicaksono, Adhityo; da Silva, Jaime A. Teixeira Is COVID-19 impacting plant science, and is plant science impacting COVID-19? Journal Article In: Notulae Scientia Biologicae, vol. 12, no. 3, pp. 769-772, 2020, ISSN: 2067-3264. @article{Wicaksono2020cb,
title = {Is COVID-19 impacting plant science, and is plant science impacting COVID-19?},
author = {Adhityo Wicaksono and Jaime A. Teixeira da Silva},
url = {https://www.notulaebiologicae.ro/index.php/nsb/article/view/10778},
doi = {DOI:10.15835/nsb12310778 },
issn = {2067-3264},
year = {2020},
date = {2020-09-29},
journal = {Notulae Scientia Biologicae},
volume = {12},
number = {3},
pages = {769-772},
abstract = {COVID-19 changed 2020 massively after becoming a worldwide pandemic. Many countries affected by the disease witnessed disruptions in the agricultural, farming, industry, production and distribution sectors, causing a loss of crops due to reduced consumer demand. Sales of cut flowers, potted plants and seasonal crops that are sensitive to specific seasons or dates were affected, as were fertilizer and food security. Academics, including plant scientists, with limited work or research conditions during the pandemic, alleviated their work through alternative approaches, eg, in silico research, or made more time to writing research papers, while student education has largely been placed on hold or held online by lecturers. Most COVID-19 research has focused primarily on medical and social aspects while some plant science-related research has been conducted on the use of traditional medicinal plants as possible alleviating agents, but not cures, to COVID-19 patients. The integrity of science and publishing, including research related to plants, is being tested as cases of superficial research, lax or superficial peer review, and misinformation abound. COVID-19 has thus had limited impact on plant science, and vice versa, thus far, even though it is likely that most plant scientists were affected.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
COVID-19 changed 2020 massively after becoming a worldwide pandemic. Many countries affected by the disease witnessed disruptions in the agricultural, farming, industry, production and distribution sectors, causing a loss of crops due to reduced consumer demand. Sales of cut flowers, potted plants and seasonal crops that are sensitive to specific seasons or dates were affected, as were fertilizer and food security. Academics, including plant scientists, with limited work or research conditions during the pandemic, alleviated their work through alternative approaches, eg, in silico research, or made more time to writing research papers, while student education has largely been placed on hold or held online by lecturers. Most COVID-19 research has focused primarily on medical and social aspects while some plant science-related research has been conducted on the use of traditional medicinal plants as possible alleviating agents, but not cures, to COVID-19 patients. The integrity of science and publishing, including research related to plants, is being tested as cases of superficial research, lax or superficial peer review, and misinformation abound. COVID-19 has thus had limited impact on plant science, and vice versa, thus far, even though it is likely that most plant scientists were affected. |
Ramadani, Aisyah Hadi; Tamam, Muhammad Badrut; Santoso, Heri; Yamini, Thobib Hasan Al Diversity of Edible Flora and Biotourism Potential Development of Botany Adventure in Turgo, Mount Merapi National Park Yogyakarta Journal Article In: Jurnal Biota, 2020. @article{Ramadani2020a,
title = {Diversity of Edible Flora and Biotourism Potential Development of Botany Adventure in Turgo, Mount Merapi National Park Yogyakarta},
author = {Aisyah Hadi Ramadani and Muhammad Badrut Tamam and Heri Santoso and Thobib Hasan Al Yamini},
url = {http://jurnal.radenfatah.ac.id/index.php/biota/article/view/5259},
year = {2020},
date = {2020-09-24},
journal = {Jurnal Biota},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
Mustaqim, Wendy Achmmad; Amboupe, Dewi S. Cratoxylum cochinchinense (Hypericaceae): A New Record for Sulawesi, Indonesia Journal Article In: Philippine Journal of Science, vol. 149, no. 3, pp. 675-678, 2020, ISBN: 0031-7683. @article{wendy2020gb,
title = {Cratoxylum cochinchinense (Hypericaceae): A New Record for Sulawesi, Indonesia},
author = {Wendy Achmmad Mustaqim and Dewi S. Amboupe},
url = {http://philjournalsci.dost.gov.ph/images/pdf/pjs_pdf/vol149no3/Cratoxylum_cochinchinense_.pdf},
isbn = {0031-7683},
year = {2020},
date = {2020-09-14},
journal = {Philippine Journal of Science},
volume = {149},
number = {3},
pages = {675-678},
abstract = {Cratoxylum is a small genus of plants belonging to the Hypericaceae family with six species known at present. The first record for Cratoxylum cochinchinense, a mainland Southeast Asia and West Malesian tree species, is presented for Sulawesi. This record adds the number of Cratoxylum in Sulawesi to three species. A key to Cratoxylum in Sulawesi is also presented.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Cratoxylum is a small genus of plants belonging to the Hypericaceae family with six species known at present. The first record for Cratoxylum cochinchinense, a mainland Southeast Asia and West Malesian tree species, is presented for Sulawesi. This record adds the number of Cratoxylum in Sulawesi to three species. A key to Cratoxylum in Sulawesi is also presented. |
Saputra, Reza; Mustaqim, Wendy Achmmad; Metusala, Destario; Schuiteman, André Dendrobium sagin (Orchidaceae: Epidendroideae), a new species from the Bird’s Head Peninsula, West New Guinea Journal Article In: Phytotaxa, vol. 459, no. 2, pp. 190–196, 2020, ISSN: 11793163. @article{Saputra2020,
title = {Dendrobium sagin (Orchidaceae: Epidendroideae), a new species from the Bird’s Head Peninsula, West New Guinea},
author = {Reza Saputra and Wendy Achmmad Mustaqim and Destario Metusala and Andr\'{e} Schuiteman},
url = {https://www.biotaxa.org/Phytotaxa/article/view/phytotaxa.459.2.9},
doi = {https://doi.org/10.11646/phytotaxa.459.2.9},
issn = {11793163},
year = {2020},
date = {2020-09-11},
journal = {Phytotaxa},
volume = {459},
number = {2},
pages = {190\textendash196},
abstract = {With about a dozen species, Dendrobium section Fugacia Smith (1905: 343) is one of the smaller but also one of the more distinctive clades within the large genus Dendrobium Swartz (1799: 82) (Schuiteman 2014). The plants have unbranched, tufted, clavate and usually distinctly angular stems of several internodes, of which only two or three of the uppermost ones carry a non-sheathing leaf. The inflorescences are subsessile and one- or few-flowered and arise singly from the swollen upper internodes. Flowers are ephemeral, generally opening early in the morning, often before sunrise, and withering in the afternoon. Unusually in Dendrobium, the lip is mobile and delicately hinged to the short column-foot, a character-state more commonly found in the sister genus Bulbophyllum Thouars (1822: t. 3). The lip is often broader than long and can be broadly obreniform in outline.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
With about a dozen species, Dendrobium section Fugacia Smith (1905: 343) is one of the smaller but also one of the more distinctive clades within the large genus Dendrobium Swartz (1799: 82) (Schuiteman 2014). The plants have unbranched, tufted, clavate and usually distinctly angular stems of several internodes, of which only two or three of the uppermost ones carry a non-sheathing leaf. The inflorescences are subsessile and one- or few-flowered and arise singly from the swollen upper internodes. Flowers are ephemeral, generally opening early in the morning, often before sunrise, and withering in the afternoon. Unusually in Dendrobium, the lip is mobile and delicately hinged to the short column-foot, a character-state more commonly found in the sister genus Bulbophyllum Thouars (1822: t. 3). The lip is often broader than long and can be broadly obreniform in outline. |
Sari, Ledi Diana; Fadjar, Mohamad; Widodo, Maheno Sri; Lutfiatunnisa,; Valen, Fitri Sil Growth analysis of Asian seabass (Lates calcarifer Bloch 1790) based on morphometrics in BPBAP Journal Article In: AACL Bioflux, vol. 13, no. 5, pp. 2445-2451, 2020, ISSN: 1899-1905. @article{Valen2020b,
title = {Growth analysis of Asian seabass (Lates calcarifer Bloch 1790) based on morphometrics in BPBAP},
author = {Ledi Diana Sari and Mohamad Fadjar and Maheno Sri Widodo and Lutfiatunnisa and Fitri Sil Valen },
url = {http://www.bioflux.com.ro/docs/2020.2445-2451.pdf},
issn = {1899-1905},
year = {2020},
date = {2020-09-05},
journal = {AACL Bioflux},
volume = {13},
number = {5},
pages = {2445-2451},
abstract = {Asian seabass (Lates calcarifer) is an important food resource and has high economic value. This species has been farmed in aquaculture systems for the past several decades in many countries including Indonesia. In Indonesia, this species has been grown in numerous farms, one farm being the one belonging to the Association of Brackish Water Cultivated Fishery (BPBAP) of Situbondo. In this study, we examine the growth patterns of Asian seabass juveniles based on morphometrics using the truss morphometric method. Asian seabass juveniles are maintained at the following parameters: salinity 34 gr/L, dissolved oxygen 5.8 mg/L, temperature 31.2OC and pH 8.1. Asian seabass juveniles at the age of 60 days have an average total length of 54 mm, at the age of 75 days they have an average total length of 73 mm and at 148 days they have an average total length of 117 mm. The growth pattern of each specimen is negative allometric, with the resulting b value of b\<3. Thus, the growth rate of Asian seabass juveniles can be influenced by age and environmental factors in aquaculture. },
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Asian seabass (Lates calcarifer) is an important food resource and has high economic value. This species has been farmed in aquaculture systems for the past several decades in many countries including Indonesia. In Indonesia, this species has been grown in numerous farms, one farm being the one belonging to the Association of Brackish Water Cultivated Fishery (BPBAP) of Situbondo. In this study, we examine the growth patterns of Asian seabass juveniles based on morphometrics using the truss morphometric method. Asian seabass juveniles are maintained at the following parameters: salinity 34 gr/L, dissolved oxygen 5.8 mg/L, temperature 31.2OC and pH 8.1. Asian seabass juveniles at the age of 60 days have an average total length of 54 mm, at the age of 75 days they have an average total length of 73 mm and at 148 days they have an average total length of 117 mm. The growth pattern of each specimen is negative allometric, with the resulting b value of b<3. Thus, the growth rate of Asian seabass juveniles can be influenced by age and environmental factors in aquaculture. |
Luqman, Arif; Kharisma, Viol Dhea; Ruiz, Ruben Amian; Götz, Friedrich In Silico and in Vitro Study of Trace Amines (TA) and Dopamine (DOP) Interaction with Human Alpha 1-Adrenergic Receptor and the Bacterial Adrenergic Receptor QseC Journal Article In: Cellular Physiology and Biochemistry, vol. 54, no. 5, pp. 888-898, 2020, ISSN: 14219778. @article{Arif2020,
title = {In Silico and in Vitro Study of Trace Amines (TA) and Dopamine (DOP) Interaction with Human Alpha 1-Adrenergic Receptor and the Bacterial Adrenergic Receptor QseC},
author = {Arif Luqman and Viol Dhea Kharisma and Ruben Amian Ruiz and Friedrich G\"{o}tz},
url = {https://pubmed.ncbi.nlm.nih.gov/32930525/},
doi = {https://doi.org/10.33594/000000276},
issn = {14219778},
year = {2020},
date = {2020-09-03},
journal = {Cellular Physiology and Biochemistry},
volume = {54},
number = {5},
pages = {888-898},
abstract = {Background/aims: Trace amines (TA) are small organic compounds that have neuromodulator activity due to their interaction with some neuron-related receptors, such as trace amine associated receptors (TAARs), α2-adrenergic receptor (α2-AR) and \ss-adrenergic receptor (\ss-AR). However, there is little information on whether TA and dopamine (DOP) can interact with other adrenergic receptors (ARs) such as the mammalian α1-AR and the bacterial counterpart QseC, which is involved in quorum sensing of some Gram-negative pathogens. The aim of this study was to investigate the interaction of TA and DOP with α1-AR and QseC.
Methods: We performed an in silico study using 3D structure from SWISS MODEL and analyzed the protein interaction via molecular docking using PyMol, PoseView and PyRX 8.0. For the in vitro study, we investigated the QseC kinase activity by measuring the remaining ATP in a reaction containing QseC-enriched membrane incubated together with purified QseB and EPI, TA, DOP, or PTL respectively. We also measured the intracellular Ca++ levels, which represents the α1-AR activation, in LNCAP (pancreatic cell line) cells treated with EPI, TA, DOP and PTL respectively using a fluorescence-based assay. The LNCAP cell proliferation was measured using an MTT-based assay.
Results: Our in silico analysis revealed that TAs and DOP have high binding affinity to the human α1-AR and the bacterial adrenergic receptor (QseC), comparable to epinephrine (EPI). Both are membrane-bound kinases. Experimental studies with pancreatic cell line (LNCAP) showed that the TAs and DOP act as α1-AR antagonist by counteracting the effect of EPI. In the presence of EPI, TA and DOP trigger an increase of the intracellular Ca++ levels in the LNCAP cells leading to an inhibition of cell proliferation. Although in silico data suggest an interaction of TA and DOP with QseC, they do not inhibit the kinase activity of QseC, a histidine kinase receptor involved in quorum sensing which is also sensitive to EPI.
Conclusion: Our study showed that the TAs and DOP act as α1-AR antagonist but no effect was observed for QseC.
Keywords: Trace amines; Dopamine; QseC; α1-adrenergic receptor.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Background/aims: Trace amines (TA) are small organic compounds that have neuromodulator activity due to their interaction with some neuron-related receptors, such as trace amine associated receptors (TAARs), α2-adrenergic receptor (α2-AR) and ß-adrenergic receptor (ß-AR). However, there is little information on whether TA and dopamine (DOP) can interact with other adrenergic receptors (ARs) such as the mammalian α1-AR and the bacterial counterpart QseC, which is involved in quorum sensing of some Gram-negative pathogens. The aim of this study was to investigate the interaction of TA and DOP with α1-AR and QseC.
Methods: We performed an in silico study using 3D structure from SWISS MODEL and analyzed the protein interaction via molecular docking using PyMol, PoseView and PyRX 8.0. For the in vitro study, we investigated the QseC kinase activity by measuring the remaining ATP in a reaction containing QseC-enriched membrane incubated together with purified QseB and EPI, TA, DOP, or PTL respectively. We also measured the intracellular Ca++ levels, which represents the α1-AR activation, in LNCAP (pancreatic cell line) cells treated with EPI, TA, DOP and PTL respectively using a fluorescence-based assay. The LNCAP cell proliferation was measured using an MTT-based assay.
Results: Our in silico analysis revealed that TAs and DOP have high binding affinity to the human α1-AR and the bacterial adrenergic receptor (QseC), comparable to epinephrine (EPI). Both are membrane-bound kinases. Experimental studies with pancreatic cell line (LNCAP) showed that the TAs and DOP act as α1-AR antagonist by counteracting the effect of EPI. In the presence of EPI, TA and DOP trigger an increase of the intracellular Ca++ levels in the LNCAP cells leading to an inhibition of cell proliferation. Although in silico data suggest an interaction of TA and DOP with QseC, they do not inhibit the kinase activity of QseC, a histidine kinase receptor involved in quorum sensing which is also sensitive to EPI.
Conclusion: Our study showed that the TAs and DOP act as α1-AR antagonist but no effect was observed for QseC.
Keywords: Trace amines; Dopamine; QseC; α1-adrenergic receptor. |
Hasan, Veryl; Widodo, Maheno S. The presence of Bull shark Carcharhinus leucas (Elasmobranchii: Carcharhinidae) in the fresh waters of Sumatra, Indonesia Journal Article In: Biodiversitas, vol. 21, no. 9, pp. 4433-4439 , 2020, ISBN: 2085-4722 . @article{Hasan2020b,
title = {The presence of Bull shark Carcharhinus leucas (Elasmobranchii: Carcharhinidae) in the fresh waters of Sumatra, Indonesia},
author = {Veryl Hasan and Maheno S. Widodo},
doi = {DOI: 10.13057/biodiv/d210962},
isbn = { 2085-4722 },
year = {2020},
date = {2020-09-01},
journal = {Biodiversitas},
volume = {21},
number = {9},
pages = {4433-4439 },
abstract = {The presence of Bull shark Carcharhinus leucas (Elasmobranchii: Carcharhinidae) in the fresh waters of Sumatra, Indonesia. Biodiversitas 21: 4433-4439. A single subadult specimen of Bull shark Carcharhinus leucas was photographed and captured by local fisherman using casting net on June 2020 in the upper Indragiri River, Riau Province, Indonesia. Carcharhinus leucas are one of only a few species of elasmobranchs that live in both marine and freshwater environments. This species currently listed as a near-threatened species based on the IUCN Red List Status. Singel specimen identified as C. leucas by the coloration of fresh specimen: white belly and greyish back, first dorsal fin high, tip of second dorsal and caudal fins black. Meristic characters measurement results as follows: total length 102 cm; fork length 86.3 cm; preanal length 65.1 cm; pre pelvic length 51.9 cm; pre pectoral length 22.5 cm; pre-orbital length 8.3 cm; head length 25 cm; pre-first dorsal length 29.4 cm; pre-second dorsal length 56 cm, and pre-caudal length 78.1 cm. This photo is considered as the third record from freshwaters of Sumatra after in the Batang Hari River, Jambi Province in 1997, and in the Musi River, South Sumatra Province in 2019. The photographic records indicate that a single specimen of C. leucas was found in the upper Indragiri River recorded more than 150 km inland. These results enhanced the understanding of C. leucas distribution in Sumatra freshwaters. Monitoring is needed to assess the possibility of the importance of the upper Indragiri River as a migration route, nursery, and growth ground of C. leucas. Studying small scale habitat use of C. leucas is challenged by their preferred habitats in freshwaters environments with fast-changing environmental conditions. Water conditions in the upper Indragiri River, namely salinity 0‰, temperature 25-27°C, dissolved oxygen 3.9-11.1 mg/l, are ideal for A. leucas habitat.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The presence of Bull shark Carcharhinus leucas (Elasmobranchii: Carcharhinidae) in the fresh waters of Sumatra, Indonesia. Biodiversitas 21: 4433-4439. A single subadult specimen of Bull shark Carcharhinus leucas was photographed and captured by local fisherman using casting net on June 2020 in the upper Indragiri River, Riau Province, Indonesia. Carcharhinus leucas are one of only a few species of elasmobranchs that live in both marine and freshwater environments. This species currently listed as a near-threatened species based on the IUCN Red List Status. Singel specimen identified as C. leucas by the coloration of fresh specimen: white belly and greyish back, first dorsal fin high, tip of second dorsal and caudal fins black. Meristic characters measurement results as follows: total length 102 cm; fork length 86.3 cm; preanal length 65.1 cm; pre pelvic length 51.9 cm; pre pectoral length 22.5 cm; pre-orbital length 8.3 cm; head length 25 cm; pre-first dorsal length 29.4 cm; pre-second dorsal length 56 cm, and pre-caudal length 78.1 cm. This photo is considered as the third record from freshwaters of Sumatra after in the Batang Hari River, Jambi Province in 1997, and in the Musi River, South Sumatra Province in 2019. The photographic records indicate that a single specimen of C. leucas was found in the upper Indragiri River recorded more than 150 km inland. These results enhanced the understanding of C. leucas distribution in Sumatra freshwaters. Monitoring is needed to assess the possibility of the importance of the upper Indragiri River as a migration route, nursery, and growth ground of C. leucas. Studying small scale habitat use of C. leucas is challenged by their preferred habitats in freshwaters environments with fast-changing environmental conditions. Water conditions in the upper Indragiri River, namely salinity 0‰, temperature 25-27°C, dissolved oxygen 3.9-11.1 mg/l, are ideal for A. leucas habitat. |
Wicaksono, Adhityo; Mursidawati, Sofi Lugol’s iodine test on Rafflesia patma–Tetrastigma leucostaphylum intersection tissue for preliminary starch visualization Journal Article In: Nusantara Bioscience, vol. 12, no. 2, pp. 91-96, 2020, ISBN: 2087-3948. @article{Wicaksono2020a,
title = {Lugol’s iodine test on Rafflesia patma\textendashTetrastigma leucostaphylum intersection tissue for preliminary starch visualization},
author = {Adhityo Wicaksono and Sofi Mursidawati},
url = {https://smujo.id/nb/article/view/6444},
doi = {DOI: 10.13057/nusbiosci/n120202},
isbn = {2087-3948},
year = {2020},
date = {2020-09-01},
journal = {Nusantara Bioscience},
volume = {12},
number = {2},
pages = {91-96},
abstract = {As holoparasitic plant, Rafflesia has no recognizable plastid genome, but it has plastid-like organelle. Despite the fact that it obtains nutrients from host plant, it is unknown if Rafflesia stores primary metabolites, such as carbohydrates, from its host. A study was performed to visualize the starch in Rafflesia patma Blume proximal tissue which was intersected to its host root, Tetrastigma leucostaphylum (Dennst.) Alston, using modified Sachs’ test with Lugol’s iodine. The result revealed the absence of blackening in the R. patma tissue caused by starch reaction with the iodine, but occurred in the root cortical tissue of T. leucostaphylum. The absence of starch in R. patma tissue indicated that possibly the plastid-like organ has no similar function to amyloplast, and starch is not used for storage in the flower. It is likely that R. patma relies completely on the host’s photosynthate to maintain the flower metabolism during anthesis period. However, detailed histochemical analysis for starch or carbohydrate is needed for confirmation whether the starch is existing even in small quantity, and molecular genetic observation on sucrose intake and flowering (anthesis) regulatory genes will also be required to confirm if Rafflesia takes the photosynthate directly from its host and possibility if Rafflesia coordinates the formation of flower bud and anthesis between the endophytic tissues to prevent overexploitation of nutrients from its host.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
As holoparasitic plant, Rafflesia has no recognizable plastid genome, but it has plastid-like organelle. Despite the fact that it obtains nutrients from host plant, it is unknown if Rafflesia stores primary metabolites, such as carbohydrates, from its host. A study was performed to visualize the starch in Rafflesia patma Blume proximal tissue which was intersected to its host root, Tetrastigma leucostaphylum (Dennst.) Alston, using modified Sachs’ test with Lugol’s iodine. The result revealed the absence of blackening in the R. patma tissue caused by starch reaction with the iodine, but occurred in the root cortical tissue of T. leucostaphylum. The absence of starch in R. patma tissue indicated that possibly the plastid-like organ has no similar function to amyloplast, and starch is not used for storage in the flower. It is likely that R. patma relies completely on the host’s photosynthate to maintain the flower metabolism during anthesis period. However, detailed histochemical analysis for starch or carbohydrate is needed for confirmation whether the starch is existing even in small quantity, and molecular genetic observation on sucrose intake and flowering (anthesis) regulatory genes will also be required to confirm if Rafflesia takes the photosynthate directly from its host and possibility if Rafflesia coordinates the formation of flower bud and anthesis between the endophytic tissues to prevent overexploitation of nutrients from its host. |
Hasan, Veryl; Widodo, Maheno S.; Faqih, Abdul R.; Mahasri, Gunanti; Arief, Muhammad; Valen, Fitri S.; Tamam, Muhammad Badrut; Yonarta, Danang; Pratama, Fajar S.; Fitriadi, Ren Presence of striped flying barb Esomus metallicus (teleostei, cyprinidae) from West Sumatra, Indonesia Journal Article In: Ecology, Environment and Conservation Paper, vol. 26, pp. 73-75, 2020, ISBN: 0971–765X. @article{Hasan2020a,
title = {Presence of striped flying barb Esomus metallicus (teleostei, cyprinidae) from West Sumatra, Indonesia},
author = {Veryl Hasan and Maheno S. Widodo and Abdul R. Faqih and Gunanti Mahasri and Muhammad Arief and Fitri S. Valen and Muhammad Badrut Tamam and Danang Yonarta and Fajar S. Pratama and Ren Fitriadi},
url = {http://www.envirobiotechjournals.com/EEC/Vol26AugSuppl20/EEC-11.pdf},
isbn = {0971\textendash765X},
year = {2020},
date = {2020-08-31},
journal = {Ecology, Environment and Conservation Paper},
volume = {26},
pages = {73-75},
abstract = {Striped flying Barb Esomus metallicus is native fish from Indochina and introduced to several countries in Southeast Asia. In Sumatra (Indonesia), it was previously known only from Siak River and Reteh River, Riau Province. This paper provide the first record of E. metallicus from Maninjau Lake in West Sumatra Province, thereby extending the distribution of the species approximately 270 and 350 km west from the previous records.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Striped flying Barb Esomus metallicus is native fish from Indochina and introduced to several countries in Southeast Asia. In Sumatra (Indonesia), it was previously known only from Siak River and Reteh River, Riau Province. This paper provide the first record of E. metallicus from Maninjau Lake in West Sumatra Province, thereby extending the distribution of the species approximately 270 and 350 km west from the previous records. |
Mursidawati, Sofi; Wicaksono, Adhityo Rafflesia patma: Conservation Biology of A Holoparasite Book LIPI, 2020, ISBN: 978-979-8539-94-7. @book{Wicaksono2020bb,
title = {Rafflesia patma: Conservation Biology of A Holoparasite},
author = {Sofi Mursidawati and Adhityo Wicaksono},
editor = {Siti Nur Hidayat and Jeffrey L. Walck},
isbn = {978-979-8539-94-7},
year = {2020},
date = {2020-08-31},
publisher = {LIPI},
keywords = {},
pubstate = {published},
tppubtype = {book}
}
|
Nomleni, Aryok; Widodo, Maheno S.; Kilawati, Yuni; Valen, Fitri S. Contemporary records of sea urchin Tripneustes gratilla (Echinodermata: Echinoidea) in Timor Island, Indonesia Journal Article In: AACL Bioflux, vol. 13, no. 4, pp. 1899-1905, 2020, ISSN: 1844-8143 . @article{Valen2020,
title = {Contemporary records of sea urchin Tripneustes gratilla (Echinodermata: Echinoidea) in Timor Island, Indonesia},
author = {Aryok Nomleni and Maheno S. Widodo and Yuni Kilawati and Fitri S. Valen },
url = {http://www.bioflux.com.ro/docs/2020.1899-1905.pdf},
issn = {1844-8143 },
year = {2020},
date = {2020-08-31},
journal = {AACL Bioflux},
volume = {13},
number = {4},
pages = {1899-1905},
abstract = {This study was conducted to determine the distribution of sea urchin Tripneustes gratilla in several locations on the island of Timor, Indonesia, from 10 April to 19 June 2018, using a random sampling method and description based on habitat and distribution. The results showed that T. gratilla was more found in coastal areas with sandy muddy substrate, overgrown with seagrass beds and with salinity between 30-450 /00. Samples had an average diameter from 60 to 80 mm, with a height of 50-60 mm and a weight of 5-7 grams},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
This study was conducted to determine the distribution of sea urchin Tripneustes gratilla in several locations on the island of Timor, Indonesia, from 10 April to 19 June 2018, using a random sampling method and description based on habitat and distribution. The results showed that T. gratilla was more found in coastal areas with sandy muddy substrate, overgrown with seagrass beds and with salinity between 30-450 /00. Samples had an average diameter from 60 to 80 mm, with a height of 50-60 mm and a weight of 5-7 grams |
Leo, Sandy; Suherman, Muhammad; Permatasari, Anggi; Suganda, Darwan; Zulamri,; Winarni, Nurul L. Herpetofauna diversity in Zamrud National Park, Indonesia: baseline checklist for a Sumatra peat swamp forest ecosystem Journal Article In: Amphibian & Reptile Conservation , vol. 14, no. 2, pp. 250-263, 2020, ISBN: 1525-9153. @article{Leo,
title = {Herpetofauna diversity in Zamrud National Park, Indonesia: baseline checklist for a Sumatra peat swamp forest ecosystem},
author = {Sandy Leo and Muhammad Suherman and Anggi Permatasari and Darwan Suganda and Zulamri and Nurul L. Winarni},
url = {http://amphibian-reptile-conservation.org/pdfs/Volume/Vol_14_no_2/ARC_14_2_[General_Section]_250-263_e249.pdf},
isbn = {1525-9153},
year = {2020},
date = {2020-08-30},
journal = {Amphibian \& Reptile Conservation },
volume = {14},
number = {2},
pages = {250-263},
abstract = {\textemdashSumatra is an island that contains rich wildlife biodiversity and a variety of ecosystems, and is
categorized as one of the most threatened terrestrial ecoregions on earth. One of Sumatra’s ecosystems is
peat swamp forest, which has unusually extreme conditions, but otherwise can support diverse fora and fauna
with many endemic and endangered species, including herpetofauna. This survey was conducted in Zamrud
National Park (ZNP) with the goal of determining the herpetofaunal diversity and community. Visual encounter
survey and glue trap methods were used to sample and determine species diversity and distributions. The
survey identifed 33 herpetofauna species in ZNP, which included 12 amphibian and 21 reptile species.
Cyrtodactylus majulah was the most common species that could be found in all transects. The 33 species, or
approximately 30.8% of all herpetofauna in Kampar Peninsular, were found in only 15 days of feldwork, and
included two high-risk species, i.e., Limnonectes malesianus (NT) and Cuora amboinensis (VU). Furthermore,
two endemic Sumatra species, Chalcorana parvaccola and Pulchrana rawa, were also recorded, along with
a new distribution record of a skink species for Sumatra and Indonesia. Further surveys and monitoring are
needed to continue the inventory and to monitor the current communities, as well as to document new fndings
in other areas of ZNP.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
—Sumatra is an island that contains rich wildlife biodiversity and a variety of ecosystems, and is
categorized as one of the most threatened terrestrial ecoregions on earth. One of Sumatra’s ecosystems is
peat swamp forest, which has unusually extreme conditions, but otherwise can support diverse fora and fauna
with many endemic and endangered species, including herpetofauna. This survey was conducted in Zamrud
National Park (ZNP) with the goal of determining the herpetofaunal diversity and community. Visual encounter
survey and glue trap methods were used to sample and determine species diversity and distributions. The
survey identifed 33 herpetofauna species in ZNP, which included 12 amphibian and 21 reptile species.
Cyrtodactylus majulah was the most common species that could be found in all transects. The 33 species, or
approximately 30.8% of all herpetofauna in Kampar Peninsular, were found in only 15 days of feldwork, and
included two high-risk species, i.e., Limnonectes malesianus (NT) and Cuora amboinensis (VU). Furthermore,
two endemic Sumatra species, Chalcorana parvaccola and Pulchrana rawa, were also recorded, along with
a new distribution record of a skink species for Sumatra and Indonesia. Further surveys and monitoring are
needed to continue the inventory and to monitor the current communities, as well as to document new fndings
in other areas of ZNP. |
Irsyam, Arifin Surya Dwipa; Mustaqim, Wendy Achmmad; Irwanto, Rina Ratnasih Ficus padana Burm.f. Moraceae Book Chapter In: pp. 1-5, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Irsyam2020,
title = {Ficus padana Burm.f. Moraceae},
author = {Arifin Surya Dwipa Irsyam and Wendy Achmmad Mustaqim and Rina Ratnasih Irwanto },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_212-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_212-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-28},
pages = {1-5},
publisher = {Springer, Cham},
abstract = {Ficus elegans Hassk.; Ficus toxica Thunb.; Ficus toxicaria L.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Ficus elegans Hassk.; Ficus toxica Thunb.; Ficus toxicaria L. |
Wakhidah, Anisatu Z.; Pranata, Syafroni; Mustaqim, Wendy Achmmad Hippobroma longiflora (L.) G. Don Campanulaceae Book Chapter In: pp. 1-6, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wakhidah2020c,
title = {Hippobroma longiflora (L.) G. Don Campanulaceae},
author = {Anisatu Z. Wakhidah and Syafroni Pranata and Wendy Achmmad Mustaqim },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_124-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_124-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-28},
pages = {1-6},
publisher = {Springer, Cham},
abstract = {Isotoma longiflora (L.) C. Presl; Isotoma longiflora var. runcinata (Hassk.) Panigrahi, P. Daniel \& M. V. Viswan.; Isotoma runcinata Hassk.; Laurentia longiflora (L.) Peterm.; Lobelia longiflora L.; Rapuntium longiflorum (L.) Mill.; Solenopsis longiflora (L.) M. R. Almeida (POWO 2020).},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Isotoma longiflora (L.) C. Presl; Isotoma longiflora var. runcinata (Hassk.) Panigrahi, P. Daniel & M. V. Viswan.; Isotoma runcinata Hassk.; Laurentia longiflora (L.) Peterm.; Lobelia longiflora L.; Rapuntium longiflorum (L.) Mill.; Solenopsis longiflora (L.) M. R. Almeida (POWO 2020). |
Mustaqim, Wendy Achmmad; Ardi, Wisnu H. Hoya lacunosa Blume Apocynaceae Book Chapter In: pp. 1-4, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy2020d,
title = {Hoya lacunosa Blume Apocynaceae},
author = {Wendy Achmmad Mustaqim and Wisnu H. Ardi },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_205-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_205-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-28},
pages = {1-4},
publisher = {Springer, Cham},
abstract = {Hoya suaveolens Miq.; Otostemma lanucosum (Blume) Blume},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Hoya suaveolens Miq.; Otostemma lanucosum (Blume) Blume |
Wakhidah, Anisatu Z.; Sawitri, I Gusti Ayu Rai; Mustaqim, Wendy Achmmad Shorea javanica Koord. & Valenton Dipterocarpaceae Book Chapter In: pp. 1-7, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wakhidah2020e,
title = {Shorea javanica Koord. \& Valenton Dipterocarpaceae},
author = {Anisatu Z. Wakhidah and I Gusti Ayu Rai Sawitri and Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_170-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_170-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-27},
pages = {1-7},
publisher = {Springer, Cham},
abstract = {Shorea vandekoppeli Parijs (POWO 2020).},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Shorea vandekoppeli Parijs (POWO 2020). |
da Silva, Jaime A. Teixeira; Nezami‑Alanagh, Esmaeil; Barreal, María E.; Kher, Mafatlal M.; Wicaksono, Adhityo; Gulyás, Andrea; Hidvégi, Norbert; Magyar‑Tábori, Katalin; Dobránszki, Nóra Mendler‑Drienyovszki László Márton2 · Mariana Landín7 · Pedro Pablo Gallego3 · John A. Driver8 · Judit Shoot tip necrosis of in vitro plant cultures: a reappraisal of possible causes and solutions Journal Article In: Planta, vol. 252, no. 47, pp. 1-35, 2020, ISSN: 0032-0935. @article{Silva2020,
title = {Shoot tip necrosis of in vitro plant cultures: a reappraisal of possible causes and solutions},
author = {Jaime A. Teixeira da Silva and Esmaeil Nezami‑Alanagh and Mar\'{i}a E. Barreal and Mafatlal M. Kher and Adhityo Wicaksono and Andrea Guly\'{a}s and Norbert Hidv\'{e}gi and Katalin Magyar‑T\'{a}bori and N\'{o}ra Mendler‑Drienyovszki
L\'{a}szl\'{o} M\'{a}rton2
· Mariana Land\'{i}n7 · Pedro Pablo Gallego3 · John A. Driver8
· Judit Dobr\'{a}nszki},
url = {https://link.springer.com/content/pdf/10.1007/s00425-020-03449-4.pdf},
doi = {https://doi.org/10.1007/s00425-020-03449-4},
issn = {0032-0935},
year = {2020},
date = {2020-08-27},
journal = {Planta},
volume = {252},
number = {47},
pages = {1-35},
abstract = {Shoot tip necrosis is a physiological condition and disorder that can arise in plantlets or shoots in vitro that results in death of the shoot tip. This condition, which can spread basipetally and affect the emergence of axillary shoots from buds lower down the stem, is due to the cessation of apical dominance. STN can occur at both shoot multiplication and rooting stages. One of the most common factors that cause STN is nutrient deficiency or imbalance. Moreover, the presence or absence of plant growth regulators (auxins or cytokinins) at specific developmental stages may impact STN. The cytokinin to auxin ratio within an in vitro plant can be modified by varying the concentration of cytokinins used in the culture medium. The supply of nutrients to in vitro shoots or plantlets might also affect their hormonal balance, thus modifying the occurrence of STN. High relative humidity within culture vessels and hyperhydricity are associated with STN. An adequate supply of calcium as the divalent cation (Ca2+) can hinder STN by inhibiting the accumulation of phenolic compounds and thus programmed cell death. Moreover, the level of Ca2+ affects auxin transport and ethylene production, and higher ethylene production, which can occur as a result of high relative humidity in or poor ventilation of the in vitro culture vessel, induces STN. High relative humidity can decrease the mobility of Ca2+ within a plant, resulting in Ca2+ deficiency and STN. STN of in vitro shoots or plantlets can be halted or reversed by altering the basal medium, mainly the concentration of Ca2+, adjusting the levels of auxins or cytokinins, or modifying culture conditions. This review examines the literature related to STN, seeks to discover the associated factors and relations between them, proposes practical solutions, and attempts to better understand the mechanism(s) underlying this condition in vitro.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Shoot tip necrosis is a physiological condition and disorder that can arise in plantlets or shoots in vitro that results in death of the shoot tip. This condition, which can spread basipetally and affect the emergence of axillary shoots from buds lower down the stem, is due to the cessation of apical dominance. STN can occur at both shoot multiplication and rooting stages. One of the most common factors that cause STN is nutrient deficiency or imbalance. Moreover, the presence or absence of plant growth regulators (auxins or cytokinins) at specific developmental stages may impact STN. The cytokinin to auxin ratio within an in vitro plant can be modified by varying the concentration of cytokinins used in the culture medium. The supply of nutrients to in vitro shoots or plantlets might also affect their hormonal balance, thus modifying the occurrence of STN. High relative humidity within culture vessels and hyperhydricity are associated with STN. An adequate supply of calcium as the divalent cation (Ca2+) can hinder STN by inhibiting the accumulation of phenolic compounds and thus programmed cell death. Moreover, the level of Ca2+ affects auxin transport and ethylene production, and higher ethylene production, which can occur as a result of high relative humidity in or poor ventilation of the in vitro culture vessel, induces STN. High relative humidity can decrease the mobility of Ca2+ within a plant, resulting in Ca2+ deficiency and STN. STN of in vitro shoots or plantlets can be halted or reversed by altering the basal medium, mainly the concentration of Ca2+, adjusting the levels of auxins or cytokinins, or modifying culture conditions. This review examines the literature related to STN, seeks to discover the associated factors and relations between them, proposes practical solutions, and attempts to better understand the mechanism(s) underlying this condition in vitro. |
Mustaqim, Wendy Achmmad Ficus montana Burm.f. Moraceae Book Chapter In: pp. 1-5, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy2020a,
title = {Ficus montana Burm.f. Moraceae},
author = {Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_204-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_204-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-25},
pages = {1-5},
publisher = {Springer, Cham},
abstract = {Ficus ampelas Burm.f. var. bogoriensis (Koord. \& Valeton) Hochr. f. microcarpa Hochr; Ficus biglandulosa Miq.; Ficus copiosa auct. non Steud.; Ficus humilis Roxb.; Ficus inconstans Miq.; Ficus javanensis Dum. Cours.; Ficus madurensis Miq.; Ficus madurensis Miq. var. angustifolia Corner; Ficus montana var. purpurascens (Blume) Corner; Ficus polycarpa Roxb. var. latifolia Miq.; Ficus purpurascens Blume; Ficus quercifolia Lodd.; Ficus quercifolia Roxb.; Ficus quercifolia Roxb. var. aspera Koord. \& Valeton; Ficus quercifolia Roxb. var. humilis (Roxb.) King; Ficus quercifolia Roxb. var. inconstans (Miq.) Ridl.; Ficus sclerocoma Miq.; Ficus smaragdina S. Moore},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Ficus ampelas Burm.f. var. bogoriensis (Koord. & Valeton) Hochr. f. microcarpa Hochr; Ficus biglandulosa Miq.; Ficus copiosa auct. non Steud.; Ficus humilis Roxb.; Ficus inconstans Miq.; Ficus javanensis Dum. Cours.; Ficus madurensis Miq.; Ficus madurensis Miq. var. angustifolia Corner; Ficus montana var. purpurascens (Blume) Corner; Ficus polycarpa Roxb. var. latifolia Miq.; Ficus purpurascens Blume; Ficus quercifolia Lodd.; Ficus quercifolia Roxb.; Ficus quercifolia Roxb. var. aspera Koord. & Valeton; Ficus quercifolia Roxb. var. humilis (Roxb.) King; Ficus quercifolia Roxb. var. inconstans (Miq.) Ridl.; Ficus sclerocoma Miq.; Ficus smaragdina S. Moore |
Mustaqim, Wendy Achmmad Syzygium malaccense (L.) Merr. & L.M.Perry Myrtaceae Book Chapter In: pp. 1-9, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy2020fb,
title = {Syzygium malaccense (L.) Merr. \& L.M.Perry Myrtaceae},
author = {Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_82-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_82-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-25},
pages = {1-9},
publisher = {Springer, Cham},
abstract = {Caryophyllus malaccensis (L.) Stokes; Eugenia domestica Baill.; Eugenia macrophylla Lam.; Eugenia malaccense (L.) Merr. \& L.M.Perry; Eugenia malaccensis L.; Eugenia malaccensis var. purpurea (Roxb.) Duthie; Eugenia malaccensis var. purpurea Duthie; Eugenia megacarpa Craib; Eugenia purpurea Roxb.; Jambosa domestica Blume; Jambosa domestica var. purpurea (Roxb.) Blume; Jambosa macrophylla (Lam.) DC.; Jambosa malaccensis (L.) DC; Jambosa malaccensis (L.) Nicolson et al.; Jambosa purpurascens DC.; Jambosa purpurea (Roxb.) Wight. \& Arn.; Jambusa domestica DC.; Jambusa domestica Rumph.; Myrtus macrophylla (Lam.) Spreng.; Myrtus malaccensis (L.) Spreng},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Caryophyllus malaccensis (L.) Stokes; Eugenia domestica Baill.; Eugenia macrophylla Lam.; Eugenia malaccense (L.) Merr. & L.M.Perry; Eugenia malaccensis L.; Eugenia malaccensis var. purpurea (Roxb.) Duthie; Eugenia malaccensis var. purpurea Duthie; Eugenia megacarpa Craib; Eugenia purpurea Roxb.; Jambosa domestica Blume; Jambosa domestica var. purpurea (Roxb.) Blume; Jambosa macrophylla (Lam.) DC.; Jambosa malaccensis (L.) DC; Jambosa malaccensis (L.) Nicolson et al.; Jambosa purpurascens DC.; Jambosa purpurea (Roxb.) Wight. & Arn.; Jambusa domestica DC.; Jambusa domestica Rumph.; Myrtus macrophylla (Lam.) Spreng.; Myrtus malaccensis (L.) Spreng |
Wakhidah, Anisatu Z.; Novianti, Cindy; Mustaqim, Wendy Achmmad Peperomia pellucida (L.) Kunth Piperaceae Book Chapter In: pp. 1-8, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wakhidah2020d,
title = {Peperomia pellucida (L.) Kunth Piperaceae},
author = {Anisatu Z. Wakhidah and Cindy Novianti and Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_91-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_91-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-21},
pages = {1-8},
publisher = {Springer, Cham},
abstract = {Micropiper pellucidum (L.) Miq.; Micropiper tenellum Klotzsch ex Miq.; Peperomia concinna (Haw.) A.Dietr.; Peperomia knoblecheriana Schott; Peperomia nana C.DC.; Peperomia oleracea Poepp. ex Miq.; Peperomia pellucidavar. minor Miq.; Peperomia praetenuis Trel.; Peperomia triadophylla Peter; Peperomia vogelii Miq.; Peperomia yapensis C.DC.; Piper concinnum Haw.; Piper pellucidum L.; Verhuellia knoblocheriana (Schott) C.DC. (POWO 2020)},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Micropiper pellucidum (L.) Miq.; Micropiper tenellum Klotzsch ex Miq.; Peperomia concinna (Haw.) A.Dietr.; Peperomia knoblecheriana Schott; Peperomia nana C.DC.; Peperomia oleracea Poepp. ex Miq.; Peperomia pellucidavar. minor Miq.; Peperomia praetenuis Trel.; Peperomia triadophylla Peter; Peperomia vogelii Miq.; Peperomia yapensis C.DC.; Piper concinnum Haw.; Piper pellucidum L.; Verhuellia knoblocheriana (Schott) C.DC. (POWO 2020) |
Mustaqim, Wendy Achmmad Macaranga tanarius (L.) Müll.Arg. Euphorbiaceae Book Chapter In: pp. 1-12, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy2020e,
title = {Macaranga tanarius (L.) M\"{u}ll.Arg. Euphorbiaceae},
author = {Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_131-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_131-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-20},
pages = {1-12},
publisher = {Springer, Cham},
abstract = {Croton lacciferum Blanco; Macaranga glabra (Juss.) Pax \& K.Hoffm.; Macaranga molliuscula Kurz; Macaranga tanarius var. genuina M\"{u}ll.Arg.; Macaranga tanarius var. glabra F.Muell.; Macaranga tanarius var. tomentosa (Blume) M\"{u}ll.Arg.; Macaranga tanarius (Blume) M\"{u}ll.Arg. var. brevibracteata M\"{u}ll.Arg.; Macaranga vulcanica Elmer ex Merr.; Mappa glabra Juss.; Mappa tanarius (L.) Spreng.; Mappa tomentosa Blume; Ricinus mappa Roxb.; Ricinus tanarius L.; Rottlera tomentosa (Blume) Hassk.; Tanarius minor rubra Rumph.; Tanarius minor alba Rumph.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Croton lacciferum Blanco; Macaranga glabra (Juss.) Pax & K.Hoffm.; Macaranga molliuscula Kurz; Macaranga tanarius var. genuina Müll.Arg.; Macaranga tanarius var. glabra F.Muell.; Macaranga tanarius var. tomentosa (Blume) Müll.Arg.; Macaranga tanarius (Blume) Müll.Arg. var. brevibracteata Müll.Arg.; Macaranga vulcanica Elmer ex Merr.; Mappa glabra Juss.; Mappa tanarius (L.) Spreng.; Mappa tomentosa Blume; Ricinus mappa Roxb.; Ricinus tanarius L.; Rottlera tomentosa (Blume) Hassk.; Tanarius minor rubra Rumph.; Tanarius minor alba Rumph. |
Mustaqim, Wendy Achmmad; Setiawan, Eka Gaultheria leucocarpa Blume Ericaceae Book Chapter In: pp. 1-7, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy2020c,
title = {Gaultheria leucocarpa Blume Ericaceae},
author = {Wendy Achmmad Mustaqim and Eka Setiawan },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_180-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_180-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-14},
pages = {1-7},
publisher = {Springer, Cham},
abstract = {Brossaea leucocarpa (Blume) Kuntze. \textendash var. hirta Valeton ex J. J. Sm. \textendash var. hirsuta (D. Fang \& N. K. Liang) T. Z. Xu: Gaultheria crenulata Kurz; Gaultheria leucocarpa Blume var. crenulata (Kurz) T. Z. Xu; Gaultheria yunnanensis (Franchet) Rehder var. hirsuta (D. Fang \& N. K. Liang). \textendash var. leucocarpa: \textendash f. cumingiana (Vidal) Sleumer: Gaultheria cumingiana Vidal; Gaultheria laxiflora Diels; Gaultheria crenulata (non Kurz) J. J. Sm. \textendash f. scandens Hochr: ? Brossaea bandongensis (Zoll. ex Miq.) Kuntze; Gaultheria leucocarpa f. pubescens J. J. Sm.; ? Gaulthesia leucocarpa var. seminuda J. J. Sm. \textendash f. melanocarpa J. J. Sm. ex Amsh.: Brossaea bandongensis (Zoll. ex Miq.) Kuntze; Gaultheria bandongensis Zoll.; Gaultheria leucocarpa var. melanocarpa J. J. Sm. ex Steen. \textendash var. pingbienensis C. Y. Wu ex T. Z. Xu: Embelia vaniotii H. L\'{e}veill\'{e}; Gaultheria laxiflora Diels; Gaultheria leucocarpa Blume var. yunnanensis (Franchet) T. Z. Xu \& R. C. Fang; Gaultheria yunnanensis (Franchet) Rehder; Pieris fortunatii H. L\'{e}veill\'{e}; Pieris vaccinium H. L\'{e}veill\'{e}; Vaccinium yunnanense Franchet. \textendash var. psilocarpa (H. F. Copel.) Sleumer: Gaultheria cumingiana auct. non S. Vidal; Gaultheria psilocarpa H. F. Copel.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Brossaea leucocarpa (Blume) Kuntze. – var. hirta Valeton ex J. J. Sm. – var. hirsuta (D. Fang & N. K. Liang) T. Z. Xu: Gaultheria crenulata Kurz; Gaultheria leucocarpa Blume var. crenulata (Kurz) T. Z. Xu; Gaultheria yunnanensis (Franchet) Rehder var. hirsuta (D. Fang & N. K. Liang). – var. leucocarpa: – f. cumingiana (Vidal) Sleumer: Gaultheria cumingiana Vidal; Gaultheria laxiflora Diels; Gaultheria crenulata (non Kurz) J. J. Sm. – f. scandens Hochr: ? Brossaea bandongensis (Zoll. ex Miq.) Kuntze; Gaultheria leucocarpa f. pubescens J. J. Sm.; ? Gaulthesia leucocarpa var. seminuda J. J. Sm. – f. melanocarpa J. J. Sm. ex Amsh.: Brossaea bandongensis (Zoll. ex Miq.) Kuntze; Gaultheria bandongensis Zoll.; Gaultheria leucocarpa var. melanocarpa J. J. Sm. ex Steen. – var. pingbienensis C. Y. Wu ex T. Z. Xu: Embelia vaniotii H. Léveillé; Gaultheria laxiflora Diels; Gaultheria leucocarpa Blume var. yunnanensis (Franchet) T. Z. Xu & R. C. Fang; Gaultheria yunnanensis (Franchet) Rehder; Pieris fortunatii H. Léveillé; Pieris vaccinium H. Léveillé; Vaccinium yunnanense Franchet. – var. psilocarpa (H. F. Copel.) Sleumer: Gaultheria cumingiana auct. non S. Vidal; Gaultheria psilocarpa H. F. Copel. |
Wakhidah, Anisatu Z.; Mustaqim, Wendy Achmmad Syzygium cumini (L.) Skeels Myrtaceae Book Chapter In: pp. 1-7, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wakhidah2020f,
title = {Syzygium cumini (L.) Skeels Myrtaceae},
author = {Anisatu Z. Wakhidah and Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_96-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_96-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-09},
pages = {1-7},
publisher = {Springer, Cham},
abstract = {Calyptranthes capitellata Buch.-Ham. ex Wall.; Calyptranthes caryophyllifolia (Lam.) Willd.; Calyptranthes cumini (L.) Pers.; Calyptranthes oneillii Lundell; Calyptranthes tenuis Buch.-Ham. ex Wall.; Eugenia brachiata Roxb.; Eugenia calyptrata Roxb. ex Wight and Arn.; Eugenia caryophyllifolia Lam.; Eugenia cumini (L.) Druce; Eugenia frondosa Wall.; Eugenia fruticosa (DC.) Roxb.; Eugenia jambolana var. caryophyllifolia (Lam.) Duthie; Eugenia obovata Poir.; Eugenia obtusifolia Roxb.; Eugenia tenuis Duthie; Eugenia tsoi Merr. and Chun; Jambolifera coromandelica Houtt.; Jambolifera pedunculata auct. non L.; Myrtus obovata (Poir.) Spreng.; Syzygium caryophyllifolium (Lam.) DC.; Syzygium cumini var. caryophyllifolium (Lam.) K.K.Khann; Syzygium cumini var. obtusifolium (Roxb.) K.K.Khann; Syzygium cumini var. tsoi (Merr. and Chun) H.T.Chang and R.H.Miao; Syzygium fruticosum DC.; Syzygium obovatum (Poir.) DC.; Syzygium obtusifolium (Roxb.) Kostel.; Syzygium pseudojambolana Miq.; Syzygium tenue (Duthie) N.P.Balakr.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Calyptranthes capitellata Buch.-Ham. ex Wall.; Calyptranthes caryophyllifolia (Lam.) Willd.; Calyptranthes cumini (L.) Pers.; Calyptranthes oneillii Lundell; Calyptranthes tenuis Buch.-Ham. ex Wall.; Eugenia brachiata Roxb.; Eugenia calyptrata Roxb. ex Wight and Arn.; Eugenia caryophyllifolia Lam.; Eugenia cumini (L.) Druce; Eugenia frondosa Wall.; Eugenia fruticosa (DC.) Roxb.; Eugenia jambolana var. caryophyllifolia (Lam.) Duthie; Eugenia obovata Poir.; Eugenia obtusifolia Roxb.; Eugenia tenuis Duthie; Eugenia tsoi Merr. and Chun; Jambolifera coromandelica Houtt.; Jambolifera pedunculata auct. non L.; Myrtus obovata (Poir.) Spreng.; Syzygium caryophyllifolium (Lam.) DC.; Syzygium cumini var. caryophyllifolium (Lam.) K.K.Khann; Syzygium cumini var. obtusifolium (Roxb.) K.K.Khann; Syzygium cumini var. tsoi (Merr. and Chun) H.T.Chang and R.H.Miao; Syzygium fruticosum DC.; Syzygium obovatum (Poir.) DC.; Syzygium obtusifolium (Roxb.) Kostel.; Syzygium pseudojambolana Miq.; Syzygium tenue (Duthie) N.P.Balakr. |
Kharisma, Viol Dhea; Widodo, Nashi; Ansori, Arif Nur Muhammad; Nugraha, Alexander Patera A Vaccine Candidate of ZIKA Virus (ZIKV) from Polyvalent Conserved B-Cell Epitope on Viral Glycoprotein: In Silico Approach Journal Article In: Biochemical and Cellular Archives, vol. 20, pp. 2785-2793, 2020, ISBN: 0972-5075. @article{Kharisma2020a,
title = {A Vaccine Candidate of ZIKA Virus (ZIKV) from Polyvalent Conserved B-Cell Epitope on Viral Glycoprotein: In Silico Approach},
author = {Viol Dhea Kharisma and Nashi Widodo and Arif Nur Muhammad Ansori and Alexander Patera Nugraha},
url = {https://www.researchgate.net/publication/343415333_A_Vaccine_Candidate_of_ZIKA_Virus_ZIKV_from_Polyvalent_Conserved_B-Cell_Epitope_on_Viral_Glycoprotein_In_Silico_Approach},
doi = {10.35124/bca.2020.20.S1.2785},
isbn = {0972-5075},
year = {2020},
date = {2020-08-09},
journal = {Biochemical and Cellular Archives},
volume = {20},
pages = {2785-2793},
abstract = {Zika virus (ZIKV) is a member of the Flaviviridae family. This virus is spread and carried by mosquitoes (Aedes aegypti and Aedes albopictus). ZIKV belongs to the Flavivirus genus, enveloped, and positive-sense RNA that encodes structural (E) and non-structural (NS) proteins. the envelope glycoprotein of ZIKV interact with the Axl receptor to fuse the host cells. Thus, the glycoprotein molecule is an important target for the design of antiviral and vaccine candidates. Up until today, the ZIKV vaccine has not been found, so it is necessary to develop a vaccine. In silico studies such as the ZIKV vaccine design have previously been carried out, based on the conserved regions, but have not explained how many peptides are used. Moreover, researchers have not explained the possibility of peptides being recognized by B-cell receptors (BCR) as epitopes and have antigenicity to trigger direct immune responses. Thus, this study aims to develop a method for selecting candidate vaccine peptides through of polyvalent conserved regions in ZIKV glycoprotein, prediction of B cell immunogenicity, and molecular simulation of peptide interactions with BCR, biological pathways prediction of immune responses mediated by these receptors. The results showed that there were five conserved region domains in ZIKV glycoprotein as antigens. Interestingly, from the five domains, vaccine candidate peptides were obtained which could potentially be recognized by Fab/BCR. There is a functional amino acid residue position in BCR which is predicted to possibly interacting with vaccine candidate peptides, specifically Asp152 and Ser153, which have played in the activity of these receptors thus triggering protein interactions that have a role in the regulation of immune response.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Zika virus (ZIKV) is a member of the Flaviviridae family. This virus is spread and carried by mosquitoes (Aedes aegypti and Aedes albopictus). ZIKV belongs to the Flavivirus genus, enveloped, and positive-sense RNA that encodes structural (E) and non-structural (NS) proteins. the envelope glycoprotein of ZIKV interact with the Axl receptor to fuse the host cells. Thus, the glycoprotein molecule is an important target for the design of antiviral and vaccine candidates. Up until today, the ZIKV vaccine has not been found, so it is necessary to develop a vaccine. In silico studies such as the ZIKV vaccine design have previously been carried out, based on the conserved regions, but have not explained how many peptides are used. Moreover, researchers have not explained the possibility of peptides being recognized by B-cell receptors (BCR) as epitopes and have antigenicity to trigger direct immune responses. Thus, this study aims to develop a method for selecting candidate vaccine peptides through of polyvalent conserved regions in ZIKV glycoprotein, prediction of B cell immunogenicity, and molecular simulation of peptide interactions with BCR, biological pathways prediction of immune responses mediated by these receptors. The results showed that there were five conserved region domains in ZIKV glycoprotein as antigens. Interestingly, from the five domains, vaccine candidate peptides were obtained which could potentially be recognized by Fab/BCR. There is a functional amino acid residue position in BCR which is predicted to possibly interacting with vaccine candidate peptides, specifically Asp152 and Ser153, which have played in the activity of these receptors thus triggering protein interactions that have a role in the regulation of immune response. |
Ansori, Arif Nur Muhammad; Kharisma, Viol Dhea; Nugraha, Alexander Patera Phylogenetic and Pathotypic Characterization of Avian Paramyxovirus Serotype 1 (APMV-1) in Indonesia Journal Article In: Biochemical and Cellular Archives, vol. 20, pp. 3023-3027, 2020, ISBN: 0972-5075. @article{Ansori2020c,
title = {Phylogenetic and Pathotypic Characterization of Avian Paramyxovirus Serotype 1 (APMV-1) in Indonesia},
author = {Arif Nur Muhammad Ansori and Viol Dhea Kharisma and Alexander Patera Nugraha },
url = {https://www.researchgate.net/publication/343426183_Phylogenetic_and_Pathotypic_Characterization_of_Avian_Paramyxovirus_Serotype_1_APMV-1_in_Indonesia},
doi = { 10.35124/bca.2020.20.S1.3023},
isbn = {0972-5075},
year = {2020},
date = {2020-08-09},
journal = {Biochemical and Cellular Archives},
volume = {20},
pages = {3023-3027},
abstract = {Newcastle disease (ND) is recognized as one of the highly contagious and lethal infectious diseases of poultry industry globally. ND is caused by avian paramyxovirus type-1 (APMV-1) or Newcastle disease virus (Paramyxoviridae: Avulavirus). ND outbreaks have occurred in many parts of the world including Indonesia, it brought an implication on a large economic loss due to the mortality and a trade embargo on poultry in the outbreak area. This study was to characterize 58 isolates of Newcastle disease virus (NDV) collected from GenBank ® (National Center for Biotechnology Information, USA) from 1976 to 2020. Interestingly, we revealed the data of pathotype and phylogenetic analysis of the circulating NDV isolated from Indonesia based on the fusion protein gene. In sum, the results from the current study suggested that the data of pathotype and phylogenetic analysis can be used as a reference for vaccine design in Indonesia.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Newcastle disease (ND) is recognized as one of the highly contagious and lethal infectious diseases of poultry industry globally. ND is caused by avian paramyxovirus type-1 (APMV-1) or Newcastle disease virus (Paramyxoviridae: Avulavirus). ND outbreaks have occurred in many parts of the world including Indonesia, it brought an implication on a large economic loss due to the mortality and a trade embargo on poultry in the outbreak area. This study was to characterize 58 isolates of Newcastle disease virus (NDV) collected from GenBank ® (National Center for Biotechnology Information, USA) from 1976 to 2020. Interestingly, we revealed the data of pathotype and phylogenetic analysis of the circulating NDV isolated from Indonesia based on the fusion protein gene. In sum, the results from the current study suggested that the data of pathotype and phylogenetic analysis can be used as a reference for vaccine design in Indonesia. |
Kharisma, Viol Dhea; Ansoria, Arif Nur Muhammad; Widyananda, Muhammad Hermawan; Utami, Santika Lusia; PateraNugraha, Alexander Molecular Simulation: The Potency of Conserved Region on E6 HPV-16 as a Binding Target of Black Tea Compounds Against Cervical Cancer Journal Article In: Biochemical and Cellular Archives, vol. 20, pp. 2795-2802, 2020, ISBN: 0972-5075. @article{Kharisma2020b,
title = {Molecular Simulation: The Potency of Conserved Region on E6 HPV-16 as a Binding Target of Black Tea Compounds Against Cervical Cancer},
author = {Viol Dhea Kharisma and Arif Nur Muhammad Ansoria and Muhammad Hermawan Widyananda and Santika Lusia Utami and Alexander PateraNugraha},
url = {https://www.researchgate.net/profile/Viol_Kharisma/publication/343415589_Molecular_Simulation_The_Potency_of_Conserved_Region_on_E6_HPV-16_as_a_Binding_Target_of_Black_Tea_Compounds_Against_Cervical_Cancer/links/5f28f474a6fdcccc43a89e06/Molecular-Simulation-The-Potency-of-Conserved-Region-on-E6-HPV-16-as-a-Binding-Target-of-Black-Tea-Compounds-Against-Cervical-Cancer.pdf},
doi = { 10.35124/bca.2020.20.S1.2795},
isbn = { 0972-5075},
year = {2020},
date = {2020-08-09},
journal = {Biochemical and Cellular Archives},
volume = {20},
pages = {2795-2802},
abstract = {Cervical cancer ranks fourth as the deadliest cancer in women in this part of the world, around 0.5 million women and close to 0.25 million people infected with cervical cancer, some of which is caused by infection with infectious agents such as human papillomavirus (HPV). HPV consists of 2 types of genes late (L) for structural protein and early (E) for functional. E protein, which plays a crucial role in normal cell transformation called E6. E6 affects p53 activity in cells by forming the E6-p53 complex, thus directing the complex to the mechanism of degradation through the proteasome pathway. E6 has a specific binding on the conserved region, it interacts with p53, therefore the potency of E6 HPV-16 conserved region is the focus of this study. Previous research explained, the black tea compounds were identified as inhibitor effects on various types of viral infections in vitro, but the molecular mechanism was still unknown. Therefore, this study aims to identify the functional conserved region in E6 HPV-16 from all strains and chemical compounds of black tea that have the potential to become inhibitors through in silico studies, to obtain drug candidates that prevent cervical cancer. The analytical method used in this research is in silico consisting of identification of conserved region E6 HPV-16, protein modeling, docking, and molecular interaction. The results showed that all chemical compounds contained in black tea were able to act as E6 HPV-16 inhibitors by binding directly to the conserved functional region used to interact with p53. The binding of these complex compounds can affect in a biological activity of E6, so it is predicted that p53 will not be degraded because the binding domain of E6 on p53 is inhibited by black tea compounds, and has the potential to prevent cervical cancer.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Cervical cancer ranks fourth as the deadliest cancer in women in this part of the world, around 0.5 million women and close to 0.25 million people infected with cervical cancer, some of which is caused by infection with infectious agents such as human papillomavirus (HPV). HPV consists of 2 types of genes late (L) for structural protein and early (E) for functional. E protein, which plays a crucial role in normal cell transformation called E6. E6 affects p53 activity in cells by forming the E6-p53 complex, thus directing the complex to the mechanism of degradation through the proteasome pathway. E6 has a specific binding on the conserved region, it interacts with p53, therefore the potency of E6 HPV-16 conserved region is the focus of this study. Previous research explained, the black tea compounds were identified as inhibitor effects on various types of viral infections in vitro, but the molecular mechanism was still unknown. Therefore, this study aims to identify the functional conserved region in E6 HPV-16 from all strains and chemical compounds of black tea that have the potential to become inhibitors through in silico studies, to obtain drug candidates that prevent cervical cancer. The analytical method used in this research is in silico consisting of identification of conserved region E6 HPV-16, protein modeling, docking, and molecular interaction. The results showed that all chemical compounds contained in black tea were able to act as E6 HPV-16 inhibitors by binding directly to the conserved functional region used to interact with p53. The binding of these complex compounds can affect in a biological activity of E6, so it is predicted that p53 will not be degraded because the binding domain of E6 on p53 is inhibited by black tea compounds, and has the potential to prevent cervical cancer. |
Kharisma, Viol Dhea; Ansori, Arif Nur Muhammad; Nugraha, Alexander Patera Computational Study of Ginger (Zingiber Officinale) as E6 Inhibitor in Human Papillomavirus Type 16 (HPV-16) Infection Journal Article In: Biochemical and Cellular Archives, vol. 20, pp. 3155-3159,, 2020, ISSN: 10.35124/bca.2020.20.S1.3155. @article{Kharisma2020c,
title = {Computational Study of Ginger (Zingiber Officinale) as E6 Inhibitor in Human Papillomavirus Type 16 (HPV-16) Infection},
author = {Viol Dhea Kharisma and Arif Nur Muhammad Ansori and Alexander Patera Nugraha},
url = {https://www.researchgate.net/publication/343426817_Computational_Study_of_Ginger_Zingiber_Officinale_as_E6_Inhibitor_in_Human_Papillomavirus_Type_16_HPV-16_Infection},
doi = {10.35124/bca.2020.20.S1.3155},
issn = {10.35124/bca.2020.20.S1.3155},
year = {2020},
date = {2020-08-09},
journal = {Biochemical and Cellular Archives},
volume = {20},
pages = {3155-3159,},
abstract = {Cervical cancer caused by a high-risk type of HPV-16 infection, causing death for a woman due to not being treated early. However, some problems such as the high cost of chemotherapy trigger a new perspective on alternative treatments through natural ingredients. The chemical compound of Zingiber officinale has potential as an antiviral agent, but its specific molecular mechanism is unknown. This study will predict the molecular mechanism of chemical compounds from Zingiber officinale as an antiviral candidate for HPV-16 infection, through the in silico approach. Chemical compounds from Zingiber officinale in this study were obtained from the database, then molecular docking simulations, protein-ligand interaction analysis, and 3D molecular visualization were performed. We demonstrated that 6-gingerol in Zingiber officinale was predicted as a drug candidate because it has the lowest binding energy. The antiviral activity of HPV-16 from Zingiber officinale is very possible, through inhibiting the mechanism of E6 protein by 6-gingerol. We recommend these results of computational simulations in this study, can be used as a reference for drug design through in vitro and in vivo analysis.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Cervical cancer caused by a high-risk type of HPV-16 infection, causing death for a woman due to not being treated early. However, some problems such as the high cost of chemotherapy trigger a new perspective on alternative treatments through natural ingredients. The chemical compound of Zingiber officinale has potential as an antiviral agent, but its specific molecular mechanism is unknown. This study will predict the molecular mechanism of chemical compounds from Zingiber officinale as an antiviral candidate for HPV-16 infection, through the in silico approach. Chemical compounds from Zingiber officinale in this study were obtained from the database, then molecular docking simulations, protein-ligand interaction analysis, and 3D molecular visualization were performed. We demonstrated that 6-gingerol in Zingiber officinale was predicted as a drug candidate because it has the lowest binding energy. The antiviral activity of HPV-16 from Zingiber officinale is very possible, through inhibiting the mechanism of E6 protein by 6-gingerol. We recommend these results of computational simulations in this study, can be used as a reference for drug design through in vitro and in vivo analysis. |
Ansori, Arif Nur Muhammad; Fadholly, Amaq; Kharisma, Viol Dhea; Nugraha, Alexander Patera Therapeutic Potential of Avian Paramyxovirus Serotype 1 for Cancer Therapy Journal Article In: Biochemical and Cellular Archives, vol. 20, pp. 2827-2832, 2020, ISBN: 0972-5075. @article{Ansori2020d,
title = {Therapeutic Potential of Avian Paramyxovirus Serotype 1 for Cancer Therapy},
author = {Arif Nur Muhammad Ansori and Amaq Fadholly and Viol Dhea Kharisma and Alexander Patera Nugraha},
url = {https://www.researchgate.net/publication/343415933_Therapeutic_Potential_of_Avian_Paramyxovirus_Serotype_1_for_Cancer_Therapy},
doi = {10.35124/bca.2020.20.S1.2827},
isbn = {0972-5075},
year = {2020},
date = {2020-08-09},
journal = {Biochemical and Cellular Archives},
volume = {20},
pages = {2827-2832},
abstract = {Newcastle disease virus (NDV) or avian paramyxovirus serotype-1 (APMV-1) (Paramyxoviridae: Avulavirus) is recognized as one of the highly contagious and lethal virus of poultry industry globally. On the other hand, every year, morbidity and mortality caused by cancer are increasing globally. In 2014, the WHO stated that 103,100 men and 92,200 women died from cancer in Indonesia. WHO predicted that in 2030 there will be a surge in cancer patients in Indonesia up to seven times. However, the most dominant cancers are the lung, liver and colorectum in men and the breast, cervical, and lung cancers in women.In addition, development of cancer therapy with high effectiveness and selectivity towards cancer cells, as well as minimal side effects on normal cells is needed. Furthermore, NDV is a promising oncolytic virus that especially infects and kills human cancer cells.This virus, known as an oncolytic virus, can kill cancer cells without damaging healthy cells. In this review article, we demonstratedthe current update of NDV virotherapy against various human cancers.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Newcastle disease virus (NDV) or avian paramyxovirus serotype-1 (APMV-1) (Paramyxoviridae: Avulavirus) is recognized as one of the highly contagious and lethal virus of poultry industry globally. On the other hand, every year, morbidity and mortality caused by cancer are increasing globally. In 2014, the WHO stated that 103,100 men and 92,200 women died from cancer in Indonesia. WHO predicted that in 2030 there will be a surge in cancer patients in Indonesia up to seven times. However, the most dominant cancers are the lung, liver and colorectum in men and the breast, cervical, and lung cancers in women.In addition, development of cancer therapy with high effectiveness and selectivity towards cancer cells, as well as minimal side effects on normal cells is needed. Furthermore, NDV is a promising oncolytic virus that especially infects and kills human cancer cells.This virus, known as an oncolytic virus, can kill cancer cells without damaging healthy cells. In this review article, we demonstratedthe current update of NDV virotherapy against various human cancers. |
Muhaimin, Muhammad; Mustaqim, Wendy Achmmad Angiopteris evecta (G.Forst.) Hoffm. Marattiaceae Book Chapter In: pp. 1-10, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Muhaimin,
title = {Angiopteris evecta (G.Forst.) Hoffm. Marattiaceae},
author = {Muhammad Muhaimin and Wendy Achmmad Mustaqim },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_183-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_183-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-06},
pages = {1-10},
publisher = {Springer, Cham},
abstract = {Angiopteris acrocarpa de Vriese; Angiopteris alata Nadeaud; Angiopteris beecheyana de Vriese \& Harting; Angiopteris chauliodonta Copeland; Angiopteris cochinchinensis de Vriese \& Harting; Angiopteris commutata C.Presl; Angiopteris elongata Hieron.; Angiopteris lasegueana de Vriese; Angiopteris novocaledonica Hieron.; Angiopteris oldhamii Hieron.; Angiopteris presliana de Vriese; Angiopteris uncinata de Vriese; Diplazium heterophyllum Blume; Polypodium evectum G.Forst. (He and Christenhusz 2013; Rolleri 2003)},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Angiopteris acrocarpa de Vriese; Angiopteris alata Nadeaud; Angiopteris beecheyana de Vriese & Harting; Angiopteris chauliodonta Copeland; Angiopteris cochinchinensis de Vriese & Harting; Angiopteris commutata C.Presl; Angiopteris elongata Hieron.; Angiopteris lasegueana de Vriese; Angiopteris novocaledonica Hieron.; Angiopteris oldhamii Hieron.; Angiopteris presliana de Vriese; Angiopteris uncinata de Vriese; Diplazium heterophyllum Blume; Polypodium evectum G.Forst. (He and Christenhusz 2013; Rolleri 2003) |
Wakhidah, Anisatu Z.; Mustaqim, Wendy Achmmad Biophytum umbraculum Welw. Oxalidaceae Book Chapter In: pp. 1-5, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wakhidah,
title = {Biophytum umbraculum Welw. Oxalidaceae},
author = {Anisatu Z. Wakhidah and Wendy Achmmad Mustaqim },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_106-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_106-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-06},
pages = {1-5},
publisher = {Springer, Cham},
abstract = {Biophytum apodisciaz (Turcz.) Edgew. \& Hook.f.; Biophytum sessile (Buch.-Ham. ex Baill.) Knuth; l Oxalis apodisciaz Turcz.; Oxalis gracilenta Kurz; Oxalis petersiana (Klotzsch) C.M\"{u}ll.; Oxalis sessilis Buch.-Ham. ex Baill.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Biophytum apodisciaz (Turcz.) Edgew. & Hook.f.; Biophytum sessile (Buch.-Ham. ex Baill.) Knuth; l Oxalis apodisciaz Turcz.; Oxalis gracilenta Kurz; Oxalis petersiana (Klotzsch) C.Müll.; Oxalis sessilis Buch.-Ham. ex Baill. |
Wakhidah, Anisatu Z.; Mustaqim, Wendy Achmmad Centella asiatica (L.) Urb. Apiaceae Book Chapter In: pp. 1-8, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wakhidah2020a,
title = {Centella asiatica (L.) Urb. Apiaceae},
author = {Anisatu Z. Wakhidah and Wendy Achmmad Mustaqim },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_72-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_72-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-08-04},
pages = {1-8},
publisher = {Springer, Cham},
abstract = {Centella boninensis Nakai ex Tuyama; Centella coriacea Nannf.; Centella glochidiata (Benth.) Drude; Centella hirtella Nannf.; Centella tussilaginifolia (Baker) Domin; Centella ulugurensis (Engl.) Domin; Centella uniflora (Colenso) Nannf.; Trisanthus cochinchinensis Lour.; Chondrocarpus asiaticus Nutt.; Chondrocarpus triflorus Nutt.; Glyceria asiatica Nutt.; Glyceria triflora Nutt.; Hydrocotyle abbreviata A. Rich.; Hydrocotyle abyssinica Gand.; Hydrocotyle artensis Montrouz.; Hydrocotyle asiatica L.; Hydrocotyle asiatica var. monantha F. Muell.; Hydrocotyle brasiliensis Scheidw.; Hydrocotyle brevipedata St.-Lag.; Hydrocotyle brevipes DC.; Hydrocotyle dentata A. Rich.; Hydrocotyle ficarifolia Stokes; Hydrocotyle ficarioides Lam.; Hydrocotyle glochidiata Benth.; Hydrocotyle hebecarpa DC.; Hydrocotyle inaequipes DC.; Hydrocotyle indivisa Banks \& Sol. ex Hook.f.; Hydrocotyle lunata Lam.; Hydrocotyle lurida Hance; Hydrocotyle nummularioides A.Rich.; Hydrocotyle pallida DC.; Hydrocotyle reniformis Walter; Hydrocotyle sarmentosa Salisb.; Hydrocotyle sylvicola Cordem.; Hydrocotyle thunbergiana Spreng.; Hydrocotyle tussilaginifolia Baker; Hydrocotyle ulugurensis Engl.; Hydrocotyle uniflora Colenso; Neosciadium glochidiatum (Benth.) Domin.; Trisanthus cochinchinensis Lour. (POWO 2020)},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Centella boninensis Nakai ex Tuyama; Centella coriacea Nannf.; Centella glochidiata (Benth.) Drude; Centella hirtella Nannf.; Centella tussilaginifolia (Baker) Domin; Centella ulugurensis (Engl.) Domin; Centella uniflora (Colenso) Nannf.; Trisanthus cochinchinensis Lour.; Chondrocarpus asiaticus Nutt.; Chondrocarpus triflorus Nutt.; Glyceria asiatica Nutt.; Glyceria triflora Nutt.; Hydrocotyle abbreviata A. Rich.; Hydrocotyle abyssinica Gand.; Hydrocotyle artensis Montrouz.; Hydrocotyle asiatica L.; Hydrocotyle asiatica var. monantha F. Muell.; Hydrocotyle brasiliensis Scheidw.; Hydrocotyle brevipedata St.-Lag.; Hydrocotyle brevipes DC.; Hydrocotyle dentata A. Rich.; Hydrocotyle ficarifolia Stokes; Hydrocotyle ficarioides Lam.; Hydrocotyle glochidiata Benth.; Hydrocotyle hebecarpa DC.; Hydrocotyle inaequipes DC.; Hydrocotyle indivisa Banks & Sol. ex Hook.f.; Hydrocotyle lunata Lam.; Hydrocotyle lurida Hance; Hydrocotyle nummularioides A.Rich.; Hydrocotyle pallida DC.; Hydrocotyle reniformis Walter; Hydrocotyle sarmentosa Salisb.; Hydrocotyle sylvicola Cordem.; Hydrocotyle thunbergiana Spreng.; Hydrocotyle tussilaginifolia Baker; Hydrocotyle ulugurensis Engl.; Hydrocotyle uniflora Colenso; Neosciadium glochidiatum (Benth.) Domin.; Trisanthus cochinchinensis Lour. (POWO 2020) |
Ficus benjamina (L.) Moraceae Book Chapter In: pp. 1-8, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wakhidah2020b,
title = {Ficus benjamina (L.) Moraceae},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_83-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_83-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-07-23},
pages = {1-8},
publisher = {Springer, Cham},
abstract = {Ficus benjamina subsp. comosa (Roxb.) Panigrahi \& Murti; Ficus benjamina var. nuda (Miq.) M.F.Barrett; Ficus comosa Roxb.; Ficus cuspidatocaudata Hayata; Ficus haematocarpa Blume ex Decne.; Ficus neglecta Decne.; Ficus nepalensis Blanco; Ficus nitida Thunb.; Ficus nuda (Miq.) Miq.; Ficus papyrifera Griff.; Ficus parvifolia Oken; Ficus pendula Link; Ficus reclinata Desf.; Ficus retusa var. nitida (Thunb.) Miq.; Ficus striata Roth; Ficus umbrina Elmer; Ficus xavieri Merr.; Urostigma benjaminum (L.) Miq.; Urostigma benjaminum var. nudum (Miq.) Miq.; Urostigma haematocarpum Miq.; Urostigma neglectum Miq.; Urostigma nitidum (Thunb.) Miq.; Urostigma nitidum Gasp.; Urostigma nudum Miq. (POWO 2020)},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Ficus benjamina subsp. comosa (Roxb.) Panigrahi & Murti; Ficus benjamina var. nuda (Miq.) M.F.Barrett; Ficus comosa Roxb.; Ficus cuspidatocaudata Hayata; Ficus haematocarpa Blume ex Decne.; Ficus neglecta Decne.; Ficus nepalensis Blanco; Ficus nitida Thunb.; Ficus nuda (Miq.) Miq.; Ficus papyrifera Griff.; Ficus parvifolia Oken; Ficus pendula Link; Ficus reclinata Desf.; Ficus retusa var. nitida (Thunb.) Miq.; Ficus striata Roth; Ficus umbrina Elmer; Ficus xavieri Merr.; Urostigma benjaminum (L.) Miq.; Urostigma benjaminum var. nudum (Miq.) Miq.; Urostigma haematocarpum Miq.; Urostigma neglectum Miq.; Urostigma nitidum (Thunb.) Miq.; Urostigma nitidum Gasp.; Urostigma nudum Miq. (POWO 2020) |
Mustaqim, Wendy Achmmad Durio zibethinus L. Malvaceae Book Chapter In: pp. 1-8, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy2020,
title = {Durio zibethinus L. Malvaceae},
author = {Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_80-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_80-},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-07-21},
pages = {1-8},
publisher = {Springer, Cham},
abstract = {Durio acuminatisimma Merr.; Durio foetida Thunb.; Durio stercoraceous Noronha; Durio zibenthianus Kaneh.; Durio zibethinus Murray},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Durio acuminatisimma Merr.; Durio foetida Thunb.; Durio stercoraceous Noronha; Durio zibenthianus Kaneh.; Durio zibethinus Murray |
Rukmana, Siti; Ansori, Arif Nur Muhammad; Kusala, Muhammad K. J.; Utami, Ulfah; Wahyudi, Didik; Mandasari, Andita A. Molecular Identification of Trichoderma Isolates from Sugarcane Bagasse Based on Internal Transcribed Spacer (ITS) rDNA Journal Article In: Research J. Pharm. and Tech., vol. 13, no. 7, pp. 3300-3304, 2020, ISSN: 0974-3618. @article{Rukmana2020,
title = {Molecular Identification of Trichoderma Isolates from Sugarcane Bagasse Based on Internal Transcribed Spacer (ITS) rDNA},
author = {Siti Rukmana and Arif Nur Muhammad Ansori and Muhammad K. J. Kusala and Ulfah Utami and Didik Wahyudi and Andita A. Mandasari},
url = {https://rjptonline.org/HTMLPaper.aspx?Journal=Research%20Journal%20of%20Pharmacy%20and%20Technology;PID=2020-13-7-45},
doi = {10.5958/0974-360X.2020.00585.5 },
issn = {0974-3618},
year = {2020},
date = {2020-07-10},
journal = {Research J. Pharm. and Tech.},
volume = {13},
number = {7},
pages = {3300-3304},
abstract = {This study aimed to identify Trichoderma from sugarcane bagasse based on iinternal transcribed spacer (ITS) rDNA. The sample used was pure isolate of Trichoderma from sugarcane bagasse. DNA samples were isolated using the modified CTAB method. DNA was amplified using the primers ITS1 and ITS4. Interestingly, the results showed that Trichoderma genomic DNA has a concentration of 92.56 mg with a purity of 1.91. The amplicon of Trichoderma DNA is about 600 bp, whereas phylogenetic analysis shows that the sample of Trichoderma from sugarcane bagasse is one group with Trichoderma harzianum, Trichoderma piluliferum, Trichoderma sp. SQR339, Hypocrea nigricans, and Trichoderma sp. NFML CH12 BB. 15, Trichoderma aureoviride, Hypocrea lixii, and Trichoderma BAB-4585.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
This study aimed to identify Trichoderma from sugarcane bagasse based on iinternal transcribed spacer (ITS) rDNA. The sample used was pure isolate of Trichoderma from sugarcane bagasse. DNA samples were isolated using the modified CTAB method. DNA was amplified using the primers ITS1 and ITS4. Interestingly, the results showed that Trichoderma genomic DNA has a concentration of 92.56 mg with a purity of 1.91. The amplicon of Trichoderma DNA is about 600 bp, whereas phylogenetic analysis shows that the sample of Trichoderma from sugarcane bagasse is one group with Trichoderma harzianum, Trichoderma piluliferum, Trichoderma sp. SQR339, Hypocrea nigricans, and Trichoderma sp. NFML CH12 BB. 15, Trichoderma aureoviride, Hypocrea lixii, and Trichoderma BAB-4585. |
Mustaqim, Wendy Achmmad Acrothamnus suaveolens (Hook.f.) C.J.Quinn Ericaceae Book Chapter In: pp. 1-3, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy,
title = {Acrothamnus suaveolens (Hook.f.) C.J.Quinn Ericaceae},
author = {Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_178-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_178-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-07-09},
pages = {1-3},
publisher = {Springer, Cham},
abstract = {Leucopogon philippinensis (Merr.) Hosokawa; Leucopogon suaveolens Hook.f.; Styphelia obtusifolia J.J.Sm.; Styphelia philippinensis Merr.; Styphelia spicata J.J.Sm.; Styphelia suaveolens (Hook.f.) Warb.; Styphelia trilocularis J.J.Sm.; Styphelia vanderwateri Wernh.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Leucopogon philippinensis (Merr.) Hosokawa; Leucopogon suaveolens Hook.f.; Styphelia obtusifolia J.J.Sm.; Styphelia philippinensis Merr.; Styphelia spicata J.J.Sm.; Styphelia suaveolens (Hook.f.) Warb.; Styphelia trilocularis J.J.Sm.; Styphelia vanderwateri Wernh. |
Mustaqim, Wendy Achmmad Ficus septica Burm.f. Moraceae Book Chapter In: pp. 1-8, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy2020b,
title = {Ficus septica Burm.f. Moraceae},
author = {Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_85-1},
doi = { https://doi.org/10.1007/978-3-030-14116-5_85-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-07-09},
pages = {1-8},
publisher = {Springer, Cham},
abstract = {Covellia leucantatoma (Poir.) Miq.; Covellia leucopleura (Blume) Miq.; Covellia radiata (Decne.) Miq.; Covellia rapiformis (Roxb.) Miq.; Covellia stictocarpa Miq.; Covellia venosa (Willd.) Miq.; Cystogyne leucosticta (Spreng.) Gasp.; Ficus brunnea Merr.; Ficus casearia F.Muell. ex Benth.; Ficus didymophylla Warb.; Ficus geminifolia Miq.; Ficus hauilii Blanco; Ficus kaukauensis Hayata; Ficus laccifera auct. non Roxb.; Ficus laxiramea Elmer; Ficus leucantatoma Poir.; Ficus leucopleura Blume; Ficus leucosticta Spreng.; Ficus linearis Merr.; Ficus oldhamii Hance; Ficus paludosa Perr.; Ficus philippinensis Bonard ex H\'{e}rincq; Ficus radiata Decne; Ficus rapiformis Roxb.; Ficus septica Rumph.; Ficus septica Burm.f. var. cauliflora Corner; Ficus septica Burm.f. var. salicifolia Corner; Ficus stictocarpa (Miq.) Miq.; Ficus venosa Willd.; Ficus verrucosa Vahl},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Covellia leucantatoma (Poir.) Miq.; Covellia leucopleura (Blume) Miq.; Covellia radiata (Decne.) Miq.; Covellia rapiformis (Roxb.) Miq.; Covellia stictocarpa Miq.; Covellia venosa (Willd.) Miq.; Cystogyne leucosticta (Spreng.) Gasp.; Ficus brunnea Merr.; Ficus casearia F.Muell. ex Benth.; Ficus didymophylla Warb.; Ficus geminifolia Miq.; Ficus hauilii Blanco; Ficus kaukauensis Hayata; Ficus laccifera auct. non Roxb.; Ficus laxiramea Elmer; Ficus leucantatoma Poir.; Ficus leucopleura Blume; Ficus leucosticta Spreng.; Ficus linearis Merr.; Ficus oldhamii Hance; Ficus paludosa Perr.; Ficus philippinensis Bonard ex Hérincq; Ficus radiata Decne; Ficus rapiformis Roxb.; Ficus septica Rumph.; Ficus septica Burm.f. var. cauliflora Corner; Ficus septica Burm.f. var. salicifolia Corner; Ficus stictocarpa (Miq.) Miq.; Ficus venosa Willd.; Ficus verrucosa Vahl |
Devanathan, Krishnamoorthy; Mustaqim, Wendy Achmmad Etlingera coccinea (Blume) S. Sakai & Nagam. Zingiberaceae Book Chapter In: pp. 1-7, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Devanathan2020,
title = {Etlingera coccinea (Blume) S. Sakai \& Nagam. Zingiberaceae},
author = {Krishnamoorthy Devanathan and Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_149-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_149-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-07-07},
pages = {1-7},
publisher = {Springer, Cham},
abstract = {Achasma coccineum (Blume) Valeton, Achasma macrocheilos Griff., Alpinia coccinea (Blume) D. Dietr., Amomum coccineum (Blume) K.Schum., Amomum gomphocheilos Baker, Amomum macrocheilos (Griff.) Baker, Cardamomum coccineum (Blume) Kuntze, Geanthus coccineus Reinw., Geanthus coccineus Reinw. ex Blume, Hornstedtia macrocheilos (Griff.) Ridl., Hornstedtia winkleri Ridl.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Achasma coccineum (Blume) Valeton, Achasma macrocheilos Griff., Alpinia coccinea (Blume) D. Dietr., Amomum coccineum (Blume) K.Schum., Amomum gomphocheilos Baker, Amomum macrocheilos (Griff.) Baker, Cardamomum coccineum (Blume) Kuntze, Geanthus coccineus Reinw., Geanthus coccineus Reinw. ex Blume, Hornstedtia macrocheilos (Griff.) Ridl., Hornstedtia winkleri Ridl. |
Mustaqim, Wendy Achmmad Pinus merkusii Jungh. & de Vriese Pinaceae Book Chapter In: pp. 1-8, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Wendy2020f,
title = {Pinus merkusii Jungh. \& de Vriese Pinaceae},
author = {Wendy Achmmad Mustaqim},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_177-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_177-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-07-01},
pages = {1-8},
publisher = {Springer, Cham},
abstract = {Pinus finlaysoniana Wall. ex Blume; Pinus merkusii subsp. ustulata Businsk\'{y}; Pinus ustulata (Businsk\'{y}) Businsk\'{y} (POWO 2020).},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Pinus finlaysoniana Wall. ex Blume; Pinus merkusii subsp. ustulata Businský; Pinus ustulata (Businský) Businský (POWO 2020). |
Mustaqim, Wendy Achmmad Flueggea virosa (Roxb. ex Willd.) Royle Phyllanthaceae Book Chapter In: F., Franco (Ed.): pp. 1-6, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020c,
title = {Flueggea virosa (Roxb. ex Willd.) Royle Phyllanthaceae},
author = {Wendy Achmmad Mustaqim },
editor = {Franco F. },
url = {https://doi.org/10.1007/978-3-030-14116-5_141-1
},
doi = {10.1007/978-3-030-14116-5_141-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-06-18},
pages = {1-6},
publisher = {Springer, Cham},
abstract = {Acidoton virosus (Roxb. ex Willd.) Kuntze; Phyllanthus virosus Roxb. ex Willd.; Securinega virosa (Roxb. ex Willd.) Baill. subsp. melanthesioides: Flueggea melanthesoides (F.Muell.) F.Muell; Flueggea novoguineensis Valeton; Flueggea virosa (Roxb. ex Willd.) Royle f. reticulata Domin; Flueggea virosa (Roxb. ex Willd.) Royle var. aridicola Domin; Leptonema melanthesoides F.Muell.; Securinega melanthesoides (F.Muell.) Airy Shaw; Securinega melanthesoides (F. Muell.) Airy Shaw var. aridicola (Domin) Airy Shaw. subsp. virosa: Acidoton obovatus Kuntze; Bessera inermis Spreng.; Cicca pentandra Blanco; Conami portoricensis Britton; Diasperus portoricensis Kuntze; Drypetes bengalensis Spreng.; Flueggea abyssinica (A. Rich.) Baill.; Flueggea angulata (Schumach. \& Thonn.) Baill.; Flueggea arborescens Bojer; Flueggea leucophylla Wall.; Flueggea microcarpa Blume; Flueggea obovata (Willd.) Wall. ex Fern.-Vill.; Flueggea obovata (Willd.) Wall. ex Fern.-Vill. var. luxurians Chev. ex Beille; Flueggea ovalis Baill.; Flueggea senensis Klotzsch; Phyllanthus angulatus Schumach. \& Thonn.; Phyllanthus dioicus Schumach. \& Thonn.; Phyllanthus flueggeiformis M\"{u}ll. Arg.; Phyllanthus glaucus Wall.; Phyllanthus griseus Wall.; Phyllanthus leucophyllus Strachey \& Winterb. ex Baill.; Phyllanthus lucidus Hort. ex Steud.; Phyllanthus obtusus Schrank; Phyllanthus portoricensis (Kuntze) Urban; Phyllanthus reichenbachianus Sieber ex Baill.; Phyllanthus retusus Roxb.; Phyllanthus rotundatus (“rotundata”) Wall.; Phyllanthus virens Wall. ex B. D. Jacks.; Securinega abyssinica A. Rich.; Securinega microcarpa (Blume) M\"{u}ll. Arg.; Securinega obovata (Willd.) M\"{u}ll. Arg.; Xylophylla obovata Willd.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Acidoton virosus (Roxb. ex Willd.) Kuntze; Phyllanthus virosus Roxb. ex Willd.; Securinega virosa (Roxb. ex Willd.) Baill. subsp. melanthesioides: Flueggea melanthesoides (F.Muell.) F.Muell; Flueggea novoguineensis Valeton; Flueggea virosa (Roxb. ex Willd.) Royle f. reticulata Domin; Flueggea virosa (Roxb. ex Willd.) Royle var. aridicola Domin; Leptonema melanthesoides F.Muell.; Securinega melanthesoides (F.Muell.) Airy Shaw; Securinega melanthesoides (F. Muell.) Airy Shaw var. aridicola (Domin) Airy Shaw. subsp. virosa: Acidoton obovatus Kuntze; Bessera inermis Spreng.; Cicca pentandra Blanco; Conami portoricensis Britton; Diasperus portoricensis Kuntze; Drypetes bengalensis Spreng.; Flueggea abyssinica (A. Rich.) Baill.; Flueggea angulata (Schumach. & Thonn.) Baill.; Flueggea arborescens Bojer; Flueggea leucophylla Wall.; Flueggea microcarpa Blume; Flueggea obovata (Willd.) Wall. ex Fern.-Vill.; Flueggea obovata (Willd.) Wall. ex Fern.-Vill. var. luxurians Chev. ex Beille; Flueggea ovalis Baill.; Flueggea senensis Klotzsch; Phyllanthus angulatus Schumach. & Thonn.; Phyllanthus dioicus Schumach. & Thonn.; Phyllanthus flueggeiformis Müll. Arg.; Phyllanthus glaucus Wall.; Phyllanthus griseus Wall.; Phyllanthus leucophyllus Strachey & Winterb. ex Baill.; Phyllanthus lucidus Hort. ex Steud.; Phyllanthus obtusus Schrank; Phyllanthus portoricensis (Kuntze) Urban; Phyllanthus reichenbachianus Sieber ex Baill.; Phyllanthus retusus Roxb.; Phyllanthus rotundatus (“rotundata”) Wall.; Phyllanthus virens Wall. ex B. D. Jacks.; Securinega abyssinica A. Rich.; Securinega microcarpa (Blume) Müll. Arg.; Securinega obovata (Willd.) Müll. Arg.; Xylophylla obovata Willd. |
Lokho, Kreni; Mustaqim, Wendy Achmmad Polygala paniculata L. Polygalaceae Book Chapter In: F., Franco (Ed.): pp. 1-7, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Lokho2020,
title = {Polygala paniculata L. Polygalaceae},
author = {Kreni Lokho and Wendy Achmmad Mustaqim},
editor = {Franco F.},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_152-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_152-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-06-18},
pages = {1-7},
publisher = {Springer, Cham},
abstract = {Polygala brasiliensis Mart., Polygala carlotina E.H.L. Krause, Polygala paniculata f. leucoptera S.F. Blake, Polygala ramosissima Cav. (POWO 2020)},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Polygala brasiliensis Mart., Polygala carlotina E.H.L. Krause, Polygala paniculata f. leucoptera S.F. Blake, Polygala ramosissima Cav. (POWO 2020) |
Lokho, Kreni; Mustaqim, Wendy Achmmad Dianella ensifolia (L.) Redouté Asphodelaceae Book Chapter In: F., Franco (Ed.): pp. 1-6, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Lokho2020b,
title = {Dianella ensifolia (L.) Redout\'{e} Asphodelaceae},
author = {Kreni Lokho and Wendy Achmmad Mustaqim},
editor = {Franco F.},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_148-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_148-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-06-18},
pages = {1-6},
publisher = {Springer, Cham},
abstract = {Anthericum japonicum Thunb., Charlwoodia ensata (Thunb.) G\"{o}pp., Conanthera forsteri Spreng., Cordyline ensifolia (L.) Planch., Dianella albiflora Hallier f., Dianella carinata Hallier f., Dianella ensata (Thunb.) R. J. F. Hend., Dianella ensifolia f. albiflora T. S. Liu \& S. S. Ying, Dianella ensifolia f. racemulifera (Schlittler) T. S. Liu \& S. S. Ying, Dianella ensifolia f. straminea (Yatabe) Kitam., Dianella flabellata Hallier f., Dianella forsteri (Spreng.) Endl., Dianella humilis Lodd. ex Steud., Dianella ledermannii K. Krause, Dianella mauritiana Blume, Dianella montana Blume, Dianella monticola K. Krause, Dianella nemorosa Lam., Dianella nemorosa f. caeruloides Schlittler, Dianella obscura Kunth, Dianella parviflora Ridl., Dianella parviflora Zipp. ex Hallier f., Dianella philippensis Perr., Dianella pullei K. Krause, Dianella robusta Elmer, Dianella sparsiflora Schlittler, Dianella straminea Yatabe, Dracaena ensata Thunb., Dracaena ensifolia L., Dracaena nemorosa Steud., Eustrephus javanicus D.Dietr., Liliago japonica (Thunb.) C. Presl, Phalangium japonicum (Thunb.) Poir., Walleria paniculata Fritsch (POWO 2020)},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Anthericum japonicum Thunb., Charlwoodia ensata (Thunb.) Göpp., Conanthera forsteri Spreng., Cordyline ensifolia (L.) Planch., Dianella albiflora Hallier f., Dianella carinata Hallier f., Dianella ensata (Thunb.) R. J. F. Hend., Dianella ensifolia f. albiflora T. S. Liu & S. S. Ying, Dianella ensifolia f. racemulifera (Schlittler) T. S. Liu & S. S. Ying, Dianella ensifolia f. straminea (Yatabe) Kitam., Dianella flabellata Hallier f., Dianella forsteri (Spreng.) Endl., Dianella humilis Lodd. ex Steud., Dianella ledermannii K. Krause, Dianella mauritiana Blume, Dianella montana Blume, Dianella monticola K. Krause, Dianella nemorosa Lam., Dianella nemorosa f. caeruloides Schlittler, Dianella obscura Kunth, Dianella parviflora Ridl., Dianella parviflora Zipp. ex Hallier f., Dianella philippensis Perr., Dianella pullei K. Krause, Dianella robusta Elmer, Dianella sparsiflora Schlittler, Dianella straminea Yatabe, Dracaena ensata Thunb., Dracaena ensifolia L., Dracaena nemorosa Steud., Eustrephus javanicus D.Dietr., Liliago japonica (Thunb.) C. Presl, Phalangium japonicum (Thunb.) Poir., Walleria paniculata Fritsch (POWO 2020) |
Mustaqim, Wendy Achmmad Geodorum densiflorum (Lam.) Schltr. Orchidaceae Book Chapter In: F., Franco (Ed.): pp. 1-6, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020e,
title = {Geodorum densiflorum (Lam.) Schltr. Orchidaceae},
author = {Wendy Achmmad Mustaqim},
editor = {Franco F.},
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_120-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_120-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-06-18},
pages = {1-6},
publisher = {Springer, Cham},
abstract = {Arethusa glutinosa Blanco; Cistella cernua (Willd.) Blume; Cymbidium nutans (Roxb.) Sw.; Cymbidium pictum R. Br.; Dendrobium haenkeanum Steud.; Dendrobium nutans C.Presl; Epidendrum tuberosum G.Forst.; Eulophia picta (R. Br.) Ormerod; Geodorum appendiculatum Griff.; Geodorum densiflorum var. kalimpongense R. Yonzone, Lama \& Bhujel; Geodorum fucatum Lindl.; Geodorum neocaledonicum Kraenzl.; Geodorum nutans (C. Presl) Ames; Geodorum pacificum Rolfe; Geodorum pallidum D. Don; Geodorum pictum (R. Br.) Lindl.; Geodorum purpureum R. Br.; Geodorum rariflorum Lindl.; Geodorum semicristatum Lindl.; Geodorum tricarinatum Schltr.; Limodorum candidum Roxb.; Limodorum densiflorum Lam.; Limodorum nutans Roxb.; Malaxis cernua Willd.; Malaxis nutans (Roxb.) Willd.; Ortmannia cernua (Willd.) Opiz; Otandra cernua (Willd.) Salisb.; Tropidia grandis Hance POWO (2020)},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Arethusa glutinosa Blanco; Cistella cernua (Willd.) Blume; Cymbidium nutans (Roxb.) Sw.; Cymbidium pictum R. Br.; Dendrobium haenkeanum Steud.; Dendrobium nutans C.Presl; Epidendrum tuberosum G.Forst.; Eulophia picta (R. Br.) Ormerod; Geodorum appendiculatum Griff.; Geodorum densiflorum var. kalimpongense R. Yonzone, Lama & Bhujel; Geodorum fucatum Lindl.; Geodorum neocaledonicum Kraenzl.; Geodorum nutans (C. Presl) Ames; Geodorum pacificum Rolfe; Geodorum pallidum D. Don; Geodorum pictum (R. Br.) Lindl.; Geodorum purpureum R. Br.; Geodorum rariflorum Lindl.; Geodorum semicristatum Lindl.; Geodorum tricarinatum Schltr.; Limodorum candidum Roxb.; Limodorum densiflorum Lam.; Limodorum nutans Roxb.; Malaxis cernua Willd.; Malaxis nutans (Roxb.) Willd.; Ortmannia cernua (Willd.) Opiz; Otandra cernua (Willd.) Salisb.; Tropidia grandis Hance POWO (2020) |
Mustaqim, Wendy Achmmad; Ardi, Wisnu H. Ficus minahassae (Teijsm. & de Vriese) Miq. Moraceae Book Chapter In: F., Franco (Ed.): pp. 1-6, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020d,
title = {Ficus minahassae (Teijsm. \& de Vriese) Miq. Moraceae},
author = {Wendy Achmmad Mustaqim and Wisnu H. Ardi },
editor = {Franco F. },
url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_84-1},
doi = {https://doi.org/10.1007/978-3-030-14116-5_84-1},
isbn = {978-3-030-14116-5},
year = {2020},
date = {2020-06-12},
pages = {1-6},
publisher = {Springer, Cham},
abstract = {Bosscheria minahassae Teijsm. \& de Vriese; Ficus glomerata Blanco; Ficus riedelii auct. non Teijsm. ex Miq.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Bosscheria minahassae Teijsm. & de Vriese; Ficus glomerata Blanco; Ficus riedelii auct. non Teijsm. ex Miq. |
Ansori, Arif Nur Muhammad; Kharisma, Viol Dhea; Antonius, Yulanda; Tacharina, Martia Rani; Rantam, Fedik Abdul Immunobioinformatics analysis and phylogenetic tree construction of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Indonesia:spike glycoprotein gene Journal Article In: Jurnal Teknologi Laboratorium, vol. 9, no. 1, pp. 13-20, 2020, ISSN: 2580-0191. @article{Ansori2020b,
title = {Immunobioinformatics analysis and phylogenetic tree construction of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) in Indonesia:spike glycoprotein gene},
author = {Arif Nur Muhammad Ansori and Viol Dhea Kharisma and Yulanda Antonius and Martia Rani Tacharina and Fedik Abdul Rantam},
url = {https://www.teknolabjournal.com/index.php/Jtl/article/view/221/110},
doi = {https://doi.org/10.29238/teknolabjournal.v9i1.221},
issn = {2580-0191},
year = {2020},
date = {2020-06-11},
journal = {Jurnal Teknologi Laboratorium},
volume = {9},
number = {1},
pages = {13-20},
abstract = {The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes coronavirus disease 2019 (COVID-19), has spread worldwide and as a result, the World Health Organization (WHO) declared it a pandemic. At present, there are no approved vaccines against SARS-CoV-2. Therefore, the aim of this study was to predict epitope-based vaccines using bioinformatics approaches and phylogenetic tree construction of SARS-CoV-2 against the backdrop of the COVID-19 pandemic. In this study, we employed 27 isolates of SARS-CoV-2 spike glycoprotein genes retrieved from GenBank® (National Center for Biotechnology Information, USA) and the GISAID EpiCoV™ Database (Germany). We analyzed the candidate epitopes using the Immune Epitope Database and Analysis Resource. Furthermore, we performed a protective antigen prediction with VaxiJen 2.0. Data for B-cell epitope prediction, protective antigen prediction, and the underlying phylogenetic tree of SARS-CoV-2 were obtained in this research. Therefore, these data could be used to design an epitope-based vaccine against SARS-CoV-2. However, the advanced study is recommended for confirmation (in vitro and in vivo).},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
The outbreak of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), which causes coronavirus disease 2019 (COVID-19), has spread worldwide and as a result, the World Health Organization (WHO) declared it a pandemic. At present, there are no approved vaccines against SARS-CoV-2. Therefore, the aim of this study was to predict epitope-based vaccines using bioinformatics approaches and phylogenetic tree construction of SARS-CoV-2 against the backdrop of the COVID-19 pandemic. In this study, we employed 27 isolates of SARS-CoV-2 spike glycoprotein genes retrieved from GenBank® (National Center for Biotechnology Information, USA) and the GISAID EpiCoV™ Database (Germany). We analyzed the candidate epitopes using the Immune Epitope Database and Analysis Resource. Furthermore, we performed a protective antigen prediction with VaxiJen 2.0. Data for B-cell epitope prediction, protective antigen prediction, and the underlying phylogenetic tree of SARS-CoV-2 were obtained in this research. Therefore, these data could be used to design an epitope-based vaccine against SARS-CoV-2. However, the advanced study is recommended for confirmation (in vitro and in vivo). |
Mursidawati, Sofi; Wicaksono, Adhityo; da Silva, Jaime A Teixeira Rafflesia patma Blume flower organs: histology of the epidermis and vascular structures, and a search for stomata Journal Article In: Planta, vol. 251, no. 112, pp. 1-10, 2020, ISSN: 0032-0935. @article{Wicaksono2020b,
title = {Rafflesia patma Blume flower organs: histology of the epidermis and vascular structures, and a search for stomata},
author = {Sofi Mursidawati and Adhityo Wicaksono and Jaime A {Teixeira da Silva}},
url = {https://link.springer.com/article/10.1007/s00425-020-03402-5},
doi = {https://doi.org/10.1007/s00425-020-03402-5},
issn = {0032-0935},
year = {2020},
date = {2020-06-03},
journal = {Planta},
volume = {251},
number = {112},
pages = {1-10},
abstract = {Rafflesia is an endophytic holoparasitic plant that infects Tetrastigma. In a previous study, we characterized the shape of the strands of an endophyte (Rafflesia patma Blume) and hypothesized their distribution. In this study, we deepened our analysis by assessing parts of flower tissue sampled during anthesis, performed surface casting of the abaxial and adaxial sides of the perigone lobe to profile their surface features, and histologically characterized the perigone lobe, perigone tube, and central column base, including the anther and cupula region. The objective of these observations was to compare tissues from different organs and the distribution of cells staining positive for tannin, suberin, and lignin. Observable features in this study were vascular and epidermal tissue. We also observed reduced vascular tissue with xylem and vascular parenchyma in multiple organs. The adaxial epidermis found in the perigone lobes and tube had papillate cells, and their function might be to assist with the emission of odor through chemical evaporation. The abaxial epidermis, also found in perigone lobes and tube, had flattened cells. These, combined with the nearby flattened parenchyma cells, especially in the outermost, early perigone lobe, might provide a tougher (stiffer) outer protective barrier for the flower. The accumulation of tannin in perigone lobes might offer protection to the flower from herbivores prior to anthesis. Although a previous observation indicated the possibility of stomata on the surface of Rafflesia flowers, no stomata were found in this study.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Rafflesia is an endophytic holoparasitic plant that infects Tetrastigma. In a previous study, we characterized the shape of the strands of an endophyte (Rafflesia patma Blume) and hypothesized their distribution. In this study, we deepened our analysis by assessing parts of flower tissue sampled during anthesis, performed surface casting of the abaxial and adaxial sides of the perigone lobe to profile their surface features, and histologically characterized the perigone lobe, perigone tube, and central column base, including the anther and cupula region. The objective of these observations was to compare tissues from different organs and the distribution of cells staining positive for tannin, suberin, and lignin. Observable features in this study were vascular and epidermal tissue. We also observed reduced vascular tissue with xylem and vascular parenchyma in multiple organs. The adaxial epidermis found in the perigone lobes and tube had papillate cells, and their function might be to assist with the emission of odor through chemical evaporation. The abaxial epidermis, also found in perigone lobes and tube, had flattened cells. These, combined with the nearby flattened parenchyma cells, especially in the outermost, early perigone lobe, might provide a tougher (stiffer) outer protective barrier for the flower. The accumulation of tannin in perigone lobes might offer protection to the flower from herbivores prior to anthesis. Although a previous observation indicated the possibility of stomata on the surface of Rafflesia flowers, no stomata were found in this study. |