@article{Rozi2020,

title = {Amphibians Diversity in Sulap Hill and Watervang Dam, Lubuklinggau},

author = {Zico Fakhrur Rozi and Dian Samitra},

url = {https://journal.uinsgd.ac.id/index.php/biodjati/article/view/5340/4129},

doi = {10.15575/biodjati.v5i1.5340},

issn = {2541-4208},

year  = {2020},

date = {2020-06-03},

journal = {Jurnal Biodjati},

volume = {5},

number = {1},

pages = {153-163},

abstract = {ulap Hill and Watervang Dam are located in the central of the city of Lubuklinggau, South Sumatra Province, which has a variety of organisms, including amphibians. This study aimed to determine the diversity of amphibian species in the area of  Sulap Hill and Watervang Dam Lubuklinggau City. This research was conducted from June to August 2018. Data collection was an exploration method-combined visual encounter survey (VES). The samples obtained were identified at the Biology Education Laboratory, STKIP PGRI Lubuklinggau. Data analysis included species composition, diversity index, and Evenness index, and conservation status. The results of the study found 5 families, consist of 11 species: Duttaphyrnus melanotictus, Ingerophrynus divergens, Phrynoidis asper, Fejervarya cancrivora, Fejervarya limnocharis, Limnonectes kuhlii, Limnonectes macrodon, Limnonectes paramacrodon, Polypedates leucomystax, Hylarana erythraea, Ichthyophis sumatranus. The results of the data analysis showed that the amphibian diversity index in the Sulap hill (1.55) and Watervang dam (1.84) was categorized as low. The Evenness index in Sulap Hill (0.86) and Watervang Dam (0.88) was categorized as a high uniformity and stable community. Based on data from the International Union for Conservation of Nature and Natural Resources (IUCN) Red List, 8 species have the status of Least Concern, 1 species with Vulnerable status, 1 species with Near-threatened status and 1 species with data deficient status.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Luqman2020,

title = {Trace amines produced by skin bacteria accelerate wound healing in mice},

author = {Arif Luqman and Muhammad Zainul Muttaqin and Sumah Yulaipi and Patrick Ebner and Miki Matsuo and Susanne Zabel and Paula Maria Tribelli and Kay Nieselt and Dewi Hidayati and Friedrich G\"{o}tz },

url = {https://www.nature.com/articles/s42003-020-1000-7},

doi = {https://doi.org/10.1038/s42003-020-1000-7},

issn = {2399-3642},

year  = {2020},

date = {2020-06-01},

journal = {Communications Biology},

volume = {3},

number = {277},

pages = {1-10},

abstract = {Certain skin bacteria are able to convert aromatic amino acids (AAA) into trace amines (TA) that act as neuromodulators. Since the human skin and sweat contain a comparatively high content of AAA one can expect that such bacteria are able to produce TA on our skin. Here we show that TA-producing Staphylococcus epidermidis strains expressing SadA are predominant on human skin and that TA accelerate wound healing. In wounded skin, keratinocytes produce epinephrine (EPI) that leads to cell motility inhibition by β2-adrenergic receptor (β2-AR) activation thus delay wound healing. As β2-AR antagonists, TA and dopamine (DOP) abrogate the effect of EPI thus accelerating wound healing both in vitro and in a mouse model. In the mouse model, the S. epidermidis wild type strain accelerates wound healing compared to its ΔsadA mutant. Our study demonstrates that TA-producing S. epidermidis strains present on our skin might be beneficial for wound healing.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hasan2020,

title = {New records of alligator gar, Atractosteus spatula (Actinopterygii:  Lepisosteiformes: Lepisosteidae) from Bali and Java, Indonesia},

author = {Veryl Hasan and Maheno S. Widodo and R. Adharyan Islamy and Dewa A.A. Pebriani },

url = {https://www.aiep.pl/volumes/2020/1_2/txt/txt_14.php},

doi = {10.3750/AIEP/02954},

issn = {1734-1515},

year  = {2020},

date = {2020-06-01},

journal = {Acta Ichthyologica et Piscatoria },

volume = {50},

number = {2},

pages = {233-236},

abstract = {Alligator gar, Atractosteus spatula (Lacep\`{e}de, 1803), is native to North America, with introductions reported from many countries. In 2019, two specimens of A. spatula were captured in Indonesia, one in the Nyanyi Estuary, a mangrove center in the south of Bali, and the other one in the Brantas River, the main river in the province of East Java. These records were among the first of this species from open waters in Bali Island and Java Island. A description of meristic and morphometric features of a specimen are provided.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Nurhayati2020,

title = {Inventory of Land Snail in Darungan Lake, Bromo Tengger Semeru National Park 2019},

author = {Putri Afin Nurhayati and Boni Herdiawan and Galuh Ayu Chantika Dwitara},

url = {http://jurnal.radenfatah.ac.id/index.php/biota/article/view/5219},

isbn = {2460-7746},

year  = {2020},

date = {2020-05-30},

journal = {Jurnal Biota},

volume = {6},

number = {1},

pages = {42-44},

abstract = {This study aims to determine the diversity of land snails that have never been revealed before. The location of this research is in the forest in the Ranu Darungan Resort area of Bromo Tengger Semeru National Park. The method used in this study is the 1.5 km transect line method. Land snails are often found behind leaves, around tree roots, and around leaf litter. The results of this study obtained 20 species of land snails, each of which has different characteristics. Land snail identification is using a land snail identification book. The lack of information about land snails in the Ranu Darungan Resort area makes this research expected to be the basis for further research.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ansori2020,

title = {Genetic Variant of SARS-CoV-2 Isolates in Indonesia: Spike Glycoprotein Gene},

author = {Arif Nur Muhammad Ansori and Viol Dhea Kharisma and Sahal Sabilil Muttaqin and Yulanda Antonius and Arli Aditya Parikesit},

url = {https://microbiologyjournal.org/genetic-variant-of-sars-cov-2-isolates-in-indonesia-spike-glycoprotein-gene/},

doi = {https://doi.org/10.22207/JPAM.14.SPL1.35},

issn = {0973-7510},

year  = {2020},

date = {2020-05-29},

journal = {J. Pure Appl. Microbiol.},

volume = {14},

number = {6353},

pages = {971-978},

abstract = {Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2), a novel coronavirus and the primary causative agent of coronavirus disease 2019 (COVID-19), first occurred in China and rapidly spread worldwide. The government of the Republic of Indonesia confirmed its first two cases of COVID-19 in March 2020. COVID-19 is a serious illness with no efficacious antiviral medication or approved vaccine currently available. Therefore, there is a need to investigate the genome of SARS-CoV-2. In this study, we characterized SARS-CoV-2 spike glycoprotein genes from Indonesia to investigate their genetic composition and variability. Overall, ten SARS-CoV-2 spike glycoprotein gene sequences retrieved from GenBank (National Center for Biotechnology Information, USA) and the GISAID EpiCoV database (Germany) were compared. We analyzed nucleotide variants and amino acid changes using Molecular Evolutionary Genetics Analysis (MEGA) X and analyzed gene similarity using the LALIGN web server. Interestingly, we revealed several specific mutation sites, however, there were no significant changes in the genetic composition of SARS-CoV-2 spike glycoprotein genes, when compared to the Wuhan-Hu-1 isolate from China. However, this is a preliminary study and we recommend that molecular epidemiology and surveillance programs against COVID-19 in Indonesia be improved.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Turista2020,

title = {Distribution of COVID-19 and Phylogenetic Tree Construction of SARS-CoV-2 in Indonesia},

author = {Dora Dayu Rahma Turista and Aesthetica Islamy and Viol Dhea Kharisma and Arif Nur Muhammad Ansori },

url = {https://microbiologyjournal.org/distribution-of-covid-19-and-phylogenetic-tree-construction-of-sars-cov-2-in-indonesia/},

doi = {doi: 10.22207/JPAM.14.SPL1.42},

issn = {0973-7510},

year  = {2020},

date = {2020-05-28},

journal = {J. Pure Appl. Microbiol.},

volume = {14},

number = {1},

pages = {1035-1042},

abstract = {Coronavirus disease 2019 (COVID-19) is a disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). COVID-19 has spread quickly across the world and has been declared a pandemic. Indonesia has many COVID-19 cases, with a high mortality rate. This study aimed to describe the distribution of COVID-19 in Indonesia and constructed the SARS-CoV-2 phylogenetic tree from Indonesian isolates and those from other countries, including other CoVs to determine their relationship. The distribution data of COVID-19 in Indonesia were obtained from the COVID-19 Management Handling Unit and descriptively analyzed. SARS-CoV-2 isolates were retrieved from the GenBank® (National Center of Biotechnology Information, USA) and GISAID EpiCoV™ databases and were used to construct phylogenetic trees using MEGA X software. Of the 37 provinces in Indonesia, five provinces with the highest case fatality rates were DKI Jakarta, Jawa Barat, Jawa Timur, and Banten, and the five provinces with the highest cure rate were Kepulauan Riau, Bali, Aceh, Gorontalo, and DI Yogyakarta. SARS-CoV-2 Indonesian isolates were closely related to SARS-CoV-2 isolates from other countries. The rapid and widespread distribution of SARS-CoV-2 in Indonesia was caused by the lack of compliance with territorial restrictions and dishonesty with medical personnel. These data revealed that mutations can occur during the transmission process, which can be caused by a history of travel and increased patient immunity.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{wendy2020g,

title = {A new species of Diplycosia (Ericaceae) from Mount Jaya, western New Guinea},

author = {Wendy Achmmad Mustaqim and Tatik Chikmawati and Timothy M.A. Utteridge and Charlie D. Heatubun},

url = {https://www.biotaxa.org/Phytotaxa/article/view/phytotaxa.442.2.1},

doi = {https://doi.org/10.11646/phytotaxa.442.2.1},

isbn = {1179-3163},

year  = {2020},

date = {2020-05-11},

journal = {Phytotaxa},

volume = {442},

number = {2},

pages = {52-60},

abstract = {Diplycosia puradyatmikai, a new species of Ericaceae, is described from Mount Jaya in the Indonesian province of Papua, western New Guinea. A detailed description, illustration, and comparisons with the similar species D. kosteri are provided.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Kharisma2020,

title = {Construction of Epitope-Based Peptide Vaccine Against SARS-CoV-2: Immunoinformatics Study},

author = {Viol Dhea Kharisma and Arif Nur Muhammad Ansori},

url = {https://microbiologyjournal.org/construction-of-epitope-based-peptide-vaccine-against-sars-cov-2-immunoinformatics-study/#},

doi = {https://doi.org/10.22207/JPAM.14.SPL1.35},

issn = {0973-7510},

year  = {2020},

date = {2020-05-10},

journal = {J. Pure Appl. Microbiol.},

volume = {14},

number = {1},

pages = {999-1005},

abstract = {Recently, a novel coronavirus (SARS-CoV-2) appeared which is conscientious for the current outbreak in China and rapidly spread worldwide. Unluckily, there is no approved vaccine found against SARS-CoV-2. Therefore, there is an urgent need for designing a suitable peptide vaccine constituent against the SARS-CoV-2. In this study, we characterized the spike glycoprotein of SARS-CoV-2 to obtain immunogenic epitopes. In addition, we used 58 SARS-CoV-2 isolates were retrieved from the Global Initiative on Sharing All Influenza Data (GISAID) and National Center for Biotechnology Information (NCBI), then aligned to obtain the conserved region of SARS-CoV-2 spike glycoprotein. The interaction between the conserved region with ACE2 receptor, a SARS-CoV-2 receptor on the host cell, has been evaluated through molecular docking approach. The B-cell epitope was identified using the immune epitope database (IEDB) web server. Interestingly, we recommend Pep_4 ADHQPQTFVNTELH as a epitope-based peptide vaccine candidate to deal with the SARS-CoV-2 outbreak. Pep_4 has a high level of immunogenicity and does not trigger autoimmune mechanisms. Pep_4 is capable of forming BCR/Fab molecular complexes with the lowest binding energy for activation of transduction signal the direct B-cell immune response. However, further study is suggested for confirmation (in vitro and in vivo).},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Irsyam2020a,

title = {A Note on The Genus Evolvulus (Convolvulaceae) In Java, Indonesia},

author = {Arifin Surya Dwipa Irsyam and Muhammad Rifqi Hariri and Rina Ratnasih Irwanto and Wendy Achmmad Mustaqim4},

url = {https://journal.uinsgd.ac.id/index.php/biodjati/article/view/7502},

doi = { 10.15575/biodjati.v5i1.7502},

issn = { 2541-4208},

year  = {2020},

date = {2020-05-02},

journal = {Jurnal Biodjati},

volume = {5},

number = {1},

pages = {90-98},

abstract = {According to the Flora of Java, there is only one species of Evolvulus in Java, namely Evolvulus alsinoides. Since then, a second species was reported in 2017 from Universitas Indonesia, Depok, West Java, as an alien naturalized species. Some recent field studies have been conducted to provide updated taxonomic information of the genus on this island. The field observations were carried out in Banten, Jakarta, West Java, Jogjakarta, and East Java from March to December 2019. The herbarium studies were also conducted in Herbarium Bogoriense, Herbarium of Bogor Botanic Gardens, Herbarium Bandungense, and Herbarium of the Department of Biology, Universitas Indonesia. Our study reveals one newly recorded species of Evolvulus in Java already grown in cultivation, namely E. glomeratus Nees \& Mart. subsp. grandiflorus (Parodi) Ooststr. Besides that, Evolvulus nummularius is now also reported to occur in other sites of West Java and extended to Central Java. An updated key to Evolvulus in Java, descriptions to both species, photographs, and brief discussions are provided.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ihwan2020,

title = {Presence of Asian catfish Clarias batrachus (Siluriformes, Clariidae) in Madura Island, Indonesia },

author = {Ihwan and Fajar S. Pratama and Danang Yonarta and Abdul R. Faqih and Maheno S. Widodo and Fitri S. Valen and Muhammad B. Tamam and Veryl Hasan},

url = {http://www.bioflux.com.ro/docs/2020.958-962.pdf},

issn = {1844-9166},

year  = {2020},

date = {2020-04-23},

journal = {AACL Bioflux},

volume = {13},

number = {2},

pages = {958-962},

abstract = {Clarias batrachus (Linnaeus, 1758) was a species that its condition faced the risk of extinction in most parts the Java mainland due to the African catfish Clarias gariepinus (Burchell, 1822) culture industry. In September 2018, C. batrachus was captured and photographed in the Saroka River, Madura Island, east and of Java mainland. The morphological characters of this species confirm its presence in a new river, more than 150 km northeast from its type locality. The specimens of C. batrachus were characterized as follows: dorsal fin rays 60-66; anal fin rays 47-50; pectoral fin rays 9-11; ventral fin rays 6.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Veryl2020c,

title = {Presence of the invasive nile Tilapia Oreochromisniloticus Linnaeus, 1758 (Perciformes, Cichlidae) in The Yamdena Island, Indonesia},

author = {Liga Insani and Veryl Hasan and Fitri Sil Valen and Fajar Surya Pratama and Maheno Sri Widodo and Abdul Rahem Faqih and R. Adharyan Islamy and Akhmad Taufiq Mukti and Wahyu Isroni},

url = {http://www.envirobiotechjournals.com/EEC/vol26i32020/EEC-25.pdf},

year  = {2020},

date = {2020-04-22},

journal = {Ecology, Environment and Conservation Paper},

volume = {26},

number = {3},

pages = {1115-1118},

abstract = {Nile Tilapia Oreochromis niloticus is native fish to North Africa, with introductions reported from many regions in the worldwide. In Indonesia, O. niloticus was reported in the several conservation islands. On 11- 29 June 2019 specimens of O. niloticus were captured from temporary swamp and estuary in Yamdena Island, Indonesia. These records are among first of this species from a remote island in the Eastern Indonesia Archipelago. In many cases, introduced of non-native fish would cause a negative impact on the aquatic fauna by predation of larvae and eggs of native fish, so that the presence of the O. niloticus is a danger alert. The specimens of O. niloticus were characterized as follows dorsal spin rays 15, dorsal soft rays 10, pectoral fin rays 11, pelvic spin rays 1, pelvic soft rays 5, anal spin rays 8, anal soft rays 10. Other description of spesific morphological characters of a specimen are provided.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mustaqim2020,

title = {Wild native plants in urban ecossytems around Jakarta: A checklist of the woody species of Universitas Indonesia},

author = {Wendy Achmmad Mustaqim and Nisyawati},

url = {http://ejournal.uki.ac.id/index.php/prolife/article/view/1544},

isbn = { 2579-7557},

year  = {2020},

date = {2020-04-07},

journal = {Jurnal Pro-Life},

volume = {7},

number = {1},

pages = {49-60},

abstract = {A study has been conducted on the diversity of woody plants which are wild and native in Universitas Indonesia,

an urban ecosystem in the area of Jakarta Capital Region. This work is part of the flora inventory in Universitas

Indonesia. A number of 118 species (34 families) were recorded, with three largest families are Fabaceae (14

species), Moraceae (12 species) and Phyllanthaceae (10 species). Among those numbers, 26 species are climbers,

which is considerably remarkable for urban ecosystem. Twenty four were considered as lowland species. Five

were exclusively distributed in Western Java. Twenty six species have been included in Flora van Batavia which

showed that Universitas Indonesia will be an important component for the conservation of plants diversity in

Jakarta and surroundings. An estimation on abundance also given for all species recorded, which resulting that

about 41.52% species were locally rare. Discussion in future conservation in local scales also briefly discussed.

Two species, namely Helicteres viscida and Phoebe declinata, are proposed for main conservation priorities of

wild and native woody plants species in Universitas Indonesia.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Samitra2020,

title = {The herpetofauna around human settlements in Lubuklinggau City, South Sumatra, Indonesia: Composition and diversity},

author = {Dian Samitra and Zico Fakhrur Rozi},

url = {https://smujo.id/biodiv/article/view/5156},

doi = {https://doi.org/10.13057/biodiv/d210422},

issn = {2085-4722},

year  = {2020},

date = {2020-04-04},

journal = {Biodiversitas},

volume = {21},

number = {4},

pages = {1432-1437},

abstract = {Herpetofauna research has been conducted mostly in conservation forest areas, so little is known about herpetofauna outside the conservation areas, such as those around the human settlements. The data of herpetofauna near human settlements are important in carrying out conservation actions. This study aimed to determine the diversity of herpetofauna around human settlements in the city of Lubuklinggau. The study was conducted from February to August 2019. Herpetofauna samples were taken in three habitats around settlements, i.e., plantation, rice field, and river. Sampling was done with the method of visual encounter survey and time-constrained search. The data were analyzed using ecological indexes, i.e., relative abundance, and indexes of diversity, evenness, similarity, and dominance. The results showed that 378 individuals of herpetofauna were found, belonging to 27 species (12 amphibians and 15 reptiles). Eighteen species were found in the plantation (7 amphibians and 11 reptiles), 15 species in the river (10 amphibians and 5 reptiles), and 14 species in the rice field (6 amphibians and 8 reptiles). Similarity index analysis showed that the rice field had quite different species from other habitats. The herpetofauna diversity around settlements was categorized as medium.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wendy2020h,

title = {Wild native plants in urban ecosystems around Jakarta: a checklist of the woody species of Universitas Indonesia},

author = {Wendy Achmmad Mustaqim and Nisyawati },

url = {file:///E:/1544-Article%20Text-5318-1-10-20200407.pdf},

issn = { 2579-7557},

year  = {2020},

date = {2020-03-31},

journal = {Jurnal Pro-Life},

volume = {7},

number = {1},

pages = {49-60},

abstract = {A study has been conducted on the diversity of woody plants which are wild and native in Universitas Indonesia, an urban ecosystem in the area of Jakarta Capital Region. This work is part of the flora inventory in Universitas Indonesia. A number of 118 species (34 families) were recorded, with three largest families are Fabaceae (14 species), Moraceae (12 species) and Phyllanthaceae (10 species). Among those numbers, 26 species are climbers, which is considerably remarkable for urban ecosystem. Twenty four were considered as lowland species. Five were exclusively distributed in Western Java. Twenty six species have been included in Flora van Batavia which showed that Universitas Indonesia will be an important component for the conservation of plants diversity in Jakarta and surroundings. An estimation on abundance also given for all species recorded, which resulting that about 41.52% species were locally rare. Discussion in future conservation in local scales also briefly discussed. Two species, namely Helicteres viscida and Phoebe declinata, are proposed for main conservation priorities of wild and native woody plants species in Universitas Indonesia.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sofiyanti2020,

title = {Jenis-Jenis Tumbuhan Paku di Pulau Rangsang, Kepulauan Meranti, Riau dan Karakteristik Morfologi-Palinologi},

author = {Nery Sofiyanti and Afni Atika Marpaung and Rissan Suriatno and Syafroni Pranata},

doi = {DOI: 10.29303/jbt.v20i1.1711},

issn = {2549-7863},

year  = {2020},

date = {2020-03-23},

journal = {Jurnal Biologi Tropis},

volume = {20},

number = {1},

pages = {102-110},

abstract = {Pulau Rangsang meupakan salah satu pulau utama di Kabupaten Kepulauan Meranti, Provinsi Riau yang mempunyai keunikan habitat bagi berbagai jenis flora termasuk golongan tumbuhan paku. Namun data mengenai keanekaragaman flora paku di pulau ini belum pernah dilaporkan sebelumnya. Tujuan dari penelitian ini adalah untuk menginventarisasi jenisjenis tumbuhan paku di Pulau Rangsang serta mengkarakterisasi morfologi dan sporanya. Pengambilan sampel dilakukan dengan metode eksplorasi sedangkan pembuatan preparat spora dengan metode asetolisis dan tanpa asetolisis. Sebanyak 23 jenis tumbuhan paku telah di identifikasi di lokasi kajian, yang tergolong dalam 8 Famili, 3 Ordo dan 1 Divisi Polypodiophyta. Tipe dasar spora yang ditemukan adalah monolete, dan trilete, dengan laesura monosulkat dan trikomonosulkat. Tipe spora berdasarkan ukuran yang ditemukan adalah ukuran spora medium dan spora besar.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ramadani2020,

title = {Spatial Distribution and Morphology Character of Podang Mangoes (Mangifera indica L.) from Five Sub-district in Kediri Regency, East Java, Indonesia},

author = {Aisyah Hadi Ramadani and Muhammad Riza Firdausi and Rasyadan Taufiq Probojati and Ahmad Affan Ali Murtadlo},

url = {http://jurnalsaintek.uinsby.ac.id/index.php/biotropic/article/view/797},

doi = {https://doi.org/10.29080/biotropic.2020.4.1.1-7},

issn = {2580-5029},

year  = {2020},

date = {2020-02-29},

journal = {BIOTROPIC The Journal of Tropical Biology},

volume = {4},

number = {1},

pages = {1-7},

abstract = {This study obejctives to determine the distribution maps and identify the morphological character of local Mangga Podang at five sub-districts in Kediri. This research used purposive sampling method for collecting data. Coordinate of local mango wasanalyzed using QGIS software version 3.6. Morphological characters are examined by observing the morphology. Microclimate factors that were measured are altitude, intensity, temperature and moisture of soil and air, soil pH, and soil nutrient. Morphological characterswere analyzed for homogenity by statistical test. The results showed that Mangga Podang distribution has spread in residential areas and has different altitude factors between 85-459 meters above sea level. The total population(individu/400m2) found in this study were Mojo10(11.2%), Banyakan 17 (19.1%), Grogol8 (9%), Semen 3 (3,4%)and Tarokan51 (57.3%). Mangga Podangof Kediri Regency generally have homogenous morphological characters, but there were the special character which differs each other, they are the number of flowers in 1 panicle, the weight of ripe fruit and exocarp color of ripe fruits. This morphological variation dependent to light intensity, altitudinal, the velocity of wind and soil nutrient factors.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wicaksono2020,

title = {The water-hopping kinematics of the tree-climbing fish, Periophthalmus variabilis},

author = {Adhityo Wicaksono and Saifullah Hidayat and Bambang Retnoaji and Parvez Alam},

doi = {https://doi.org/10.1016/j.zool.2020.125750},

year  = {2020},

date = {2020-01-24},

journal = {Zoology},

abstract = {In this communication, we describe the water-hopping kinematics of the dusky-gilled mudskipper (Periophthalmus variabilis), and by doing so elucidate an entirely new form of fish locomotion that has yet to be reported in the public domain. Water-hopping is defined herein as an ability to hop once, or in succession, on the surface of water without full submergence and without a fin-guided glide. We find that taxiing on the water surface is the predominating kinematic movement used for the execution of successful water-hops. We observe that an initial concentric ripple forms as the mudskipper impacts the water, and that subsequent taxiing on the water surface generates a sinusoid-like ripple pattern in the water prior to take off. Interestingly whilst airborne, the pectoral fins of P. variabilis appear to remain stationary, only to be deployed immediately upon contact with the water. When landing back onto the surface of the water, P. variabilis makes the initial contact via its pelvic region, occasionally extending its pectoral fins during its descent. The reasons for pectoral and pelvic fin extension are unclear, however, there may be either aerodynamic or hydrodynamic benefits in its doing so. This motion furthermore prepares the mudskipper for either, a follow-on water-hop, or a discontinuation of movement altogether, as the body of the mudskipper becomes aligned in a way conducive to either. P. variabilis will launch and land using both, horizontal surfaces such as littorals, and inclined-to-vertical surfaces such as rocks and trees.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{SerdiatiN.2020,

title = {Andinoacara rivulatus (Perciformes: Cichlidae), an introduced exotic fish in the upstream of Brantas River, Indonesia},

author = {Serdiati N and Yonarta D and Pratama F. S and Faqih A. R and Valen F. S and M. Badrut Tamam and Hamzah Y. I. G and Hasan V},

url = {http://www.bioflux.com.ro/docs/2020.137-141.pdf},

issn = {1844-9166},

year  = {2020},

date = {2020-01-23},

journal = { AACL Bioflux},

volume = {13},

number = {1},

pages = {137-141},

abstract = {The presence of non-native fish, especially types of predators was a real threat to freshwater ecosystems in Indonesia, peculiarly for native fish which were unable to compete. The entry of invasive fish had the potential as a disease vector, uncontrolled hybridization, and damaging food webs that would have a systemic impact on the ecosystem. This study discussed the first record of the existence of Green terror, Andinoacara rivulatus from South America in the freshwater waters of East Java, Indonesia, precisely in the upstream of Brantas River. A description of morphological characters of a specimen is provided. },

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mustaqim2019d,

title = {Alocasia alba (Araceae) in Southern Sumatra: further distribution recorded},

author = {Wendy A. Mustaqim and Eka Setiawan},

url = {https://biodiversitas.mipa.uns.ac.id/D/D1901/D190121.pdf},

doi = {DOI: 10.13057/biodiv/d190121},

issn = {2310-0745},

year  = {2019},

date = {2019-12-03},

journal = {Journal of the International Aroid Society },

volume = {42},

number = {2},

pages = {18-22},

abstract = {Some new specimens of Alocasia alba were recently collected in Lampung Province, southern part of Sumatra and become confirmation of this species in Sumatra, which is actually common in some sites of the province. Description, illustration and brief notes are presented.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mustaqim2019b,

title = {Ericaceae of Sulawesi: A new species of Diplycosia, a new variety of Vaccinium paludicolum and one rediscovery},

author = {Mustaqim, Wendy A; Wisnu, H. Ardi},

url = {https://openjournals.library.sydney.edu.au/index.php/TEL/article/view/13168/0},

doi = {http://dx.doi.org/10.7751/telopea13168},

issn = { 2200-4025},

year  = {2019},

date = {2019-11-28},

journal = {Telopea Journal of Plant Systematics},

volume = {22},

pages = {193-204},

abstract = {Diplycosia jiewhoei Mustaqim and Vaccinium paludicolum var. hirsutulum Mustaqim are described as new taxa. Diplycosia retusa has been rediscovered after a lapse of 116 years and is here illustrated with photographs, and the first description of the fruits of this species is presented.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sofiyanti2019,

title = {The inventory and spore morphology of ferns from Bengkalis Island, Riau Province, Indonesia},

author = {Sofiyanti, Nery; Novaliza Isda, Mayta; Juliantari, Erwina; Suriatno, Rissan; Pranata, Syafroni},

url = {https://smujo.id/biodiv/article/view/4416/3486},

doi = {10.13057/biodiv/d201115},

issn = { 2085-4722},

year  = {2019},

date = {2019-11-18},

journal = {Biodiversitas},

volume = {20},

number = {11},

pages = {3223-3236},

abstract = {Bengkalis  Island  is  one  of  main  islands  at  coastal  region  of  Riau Province,  Indonesia.  The  first  fern inventory had been  conducted on  this island, to identifythe  fern  checklist  as  wellas examined the morphology  of their spores.Samples  were  collected  from  2 subdistricts  and  12  study  sites,  using  exploration  method.  The  spore specimens  were  coated  using  AU,  before  observation  using  Scanning  Electron  Microscopy(SEM).  A  total  of  22 fern species  are recorded  from  Bengkalis  Islands.  These  species  belong  to  3  orders,  i.e.  Gleicheniales(1  species), Polypodiales(20  species)  and Schizaeales(1  species).  The  spore  characteristic  indicated  similar  unity  of  spore,  i.e. monad  spore,  with  triangular,  subtriangular, tetrahedral  and  reniform  shape.  Three  basic  types  of  spore  have been  observed,  i.e.  monolete,  dilete,  and  trilete.  The  spore class observed in this study are small(22 ±0.88 μm),medium(27.35 ±1.45 to 47.85 ±0.88 μm) andlarge(51.34±1.83 to 53.8 ±1.81 μm). The ornamentation of perisphore is the main character to distinguished species within one genus.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ansori2021c,

title = {Molecular Identification of Trichoderma Isolates from Sugarcane Bagasse Based on Internal Transcribed Spacer (ITS) rDNA},

author = {Siti Rukmana and Arif N. M. Ansori and Muhammad K. J. Kusala and Ulfah Utami and Didik Wahyudi and Andita A. Mandasari},

url = {https://rjptonline.org/HTMLPaper.aspx?Journal=Research%20Journal%20of%20Pharmacy%20and%20Technology;PID=2020-13-7-45},

doi = {10.5958/0974-360X.2020.00585.5},

issn = {0974-360X},

year  = {2019},

date = {2019-09-03},

journal = {Research Journal of Pharmacy and Technology},

volume = {13},

number = {7},

pages = {3300-3304},

abstract = {This study aimed to identify Trichoderma from sugarcane bagasse based on iinternal transcribed spacer (ITS) rDNA. The sample used was pure isolate of Trichoderma from sugarcane bagasse. DNA samples were isolated using the modified CTAB method. DNA was amplified using the primers ITS1 and ITS4. Interestingly, the results showed that Trichoderma genomic DNA has a concentration of 92.56 mg with a purity of 1.91. The amplicon of Trichoderma DNA is about 600 bp, whereas phylogenetic analysis shows that the sample of Trichoderma from sugarcane bagasse is one group with Trichoderma harzianum, Trichoderma piluliferum, Trichoderma sp. SQR339, Hypocrea nigricans, and Trichoderma sp. NFML CH12 BB. 15, Trichoderma aureoviride, Hypocrea lixii, and Trichoderma BAB-4585.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{10.15560/15.1.225,

title = {First record of the invasive Nile Tilapia, Oreochromis niloticus (Linnaeus, 1758) (Perciformes, Cichlidae), on Bawean Island, Indonesia},

author = {Veryl Hasan and Muhammad Badrut Tamam},

url = {https://doi.org/10.15560/15.1.225},

doi = {10.15560/15.1.225},

year  = {2019},

date = {2019-01-01},

journal = {Check List},

volume = {15},

number = {1},

pages = {225-227},

publisher = {Pensoft Publishers},

abstract = {In 2018 we captured specimens of Oreachromis niloticus (Linnaeus, 1758) from Danau Kastoba, a crater lake on Bawean (Indonesia), a small, isolated island in the Java Sea. Additional individuals were later photographed. These records are among first of this species from an isolated island, in the Java Sea. A description of meristic and morphometric features of a specimen are provided.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Luqman2019,

title = {A new host cell internalisation pathway for SadA-expressing staphylococci triggered by excreted neurochemicals},

author = {Arif Luqman and Patrick Ebner and Sebastian Reichert and Peter Sass and Clement Kabagema-Bilan and Christine Heilmann and Peter Ruth and Friedrich G\"{o}tz},

doi = {10.1111/cmi.13044},

issn = {14625822},

year  = {2019},

date = {2019-01-01},

journal = {Cellular Microbiology},

number = {May},

pages = {1--15},

abstract = {Staphylococcus aureus is a facultative intracellular pathogen that invades a wide range of professional and nonprofessional phagocytes by triggering internalisation by interaction of surface-bound adhesins with corresponding host cell receptors. Here, we identified a new concept of host cell internalisation in animal-pathogenic staphylococcal species. This new mechanism exemplified by Staphylococcus pseudintermedius ED99 is not based on surface-bound adhesins but is due to excreted small neurochemical compounds, such as trace amines (TAs), dopamine (DOP), and serotonin (SER), that render host cells competent for bacterial internalisation. The neurochemicals are produced by only one enzyme, the staphylococcal aromatic amino acid decarboxylase (SadA). Here, we unravelled the mechanism of how neurochemicals trigger internalisation into the human colon cell line HT-29. We found that TAs and DOP are agonists of the α2-adrenergic receptor, which, when activated, induces a cascade of reactions involving a decrease in the cytoplasmic cAMP level and an increase in F-actin formation. The signalling cascade of SER follows a different pathway. SER interacts with 5HT receptors that trigger F-actin formation without decreasing the cytoplasmic cAMP level. The neurochemical-induced internalisation in host cells is independent of the fibronectin-binding protein pathway and has an additive effect. In a sadA deletion mutant, ED99ΔsadA, internalisation was decreased approximately threefold compared with that of the parent strain, and treating S. aureus USA300 with TAs increased internalisation by approximately threefold.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mustaqim2019,

title = {New and noteworthy orchid records from Buru Island, Maluku Archipelago},

author = {W A Mustaqim and I P Astuti},

doi = {10.26492/gbs71(1).2019-10},

issn = {03747859},

year  = {2019},

date = {2019-01-01},

journal = {Gardens' Bulletin Singapore},

volume = {71},

number = {1},

pages = {167--174},

abstract = {A short note on the orchids of Buru Island, Maluku Archipelago, is presented.

Bulbophyllum cruciatum J.J.Sm. and Dendrobium bicaudatum Reinw. ex Lindl. are new

records for Buru. Trichotosia buruensis (J.J.Sm.) S.Thomas et al. has been rediscovered after

a lapse of 84 years. The distribution of a species with a previously uncertain distribution in

Maluku, Dilochia wallichii Lindl., is now confirmed for Buru. We also discovered a population

of the endemic Vanda saxatilis J.J.Sm. All species are briefly discussed and illustrated by

photographs.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Mursidawati2019,

title = {Development of the endophytic parasite, Rafflesia patma Blume, among host plant (Tetrastigma leucostaphylum (Dennst.) Alston) vascular cambium tissue},

author = {Sofi Mursidawati and Adhityo Wicaksono and Jaime A {Teixeira da Silva}},

doi = {10.1016/j.sajb.2019.03.028},

issn = {02546299},

year  = {2019},

date = {2019-01-01},

journal = {South African Journal of Botany},

volume = {123},

pages = {382--386},

abstract = {The early life history of Rafflesia R.Br. is hidden by its cryptic nature. Being a holoparasitic plant, early growth and development of species in this genus have been suggested to occur inside the host plant. In this study, using microscopic analyses, we examined how Rafflesia patma Blume grows from a simple clump of cells or protocorm inside the cambium tissue of Tetrastigma leucostaphylum (Dennst.) Alston, its host plant. We further show how the protocorm expands in about 2 months into an early form of a flower knob or bud, just before the flower begins to emerge from the host plant vine. Our study suggests that the endophyte, R. patma, spreads within T. leucostaphylum vascular cambium tissue in a linear manner, but not as a continuous strand. We suspect that the parasitic endophyte spreads inside the host vascular cambium and is pushed farther away from its point of origin to another part of the host as the host vine cambium fusiform initial cells divide and enlarge over months. Moreover, the protocorm matures in the cambium region of the T. leucostaphylum vine which lies close to the xylem, and grow outwards, bursting through the host phloem, then the host cortex, and finally towards the host periderm as it begins to emerge. Although we believe this might be the closest prediction on how Rafflesia develops at an early stage and is distributed within its host body, a future analysis of endophytic tissue growth in a controlled environment, such as the use of tissue culture, is required to strengthen our findings.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Probojati2019,

title = {Clustering Analysis and Genome Inference of Pisang Raja Local Cultivars (Musa spp.) from Java Island by Random Amplified Polymorphic DNA (RAPD) Marker},

author = {Rasyadan Taufiq Probojati and Didik Wahyudi and Lia Hapsari},

url = {https://journal.ugm.ac.id/jtbb/article/view/44047},

doi = {10.22146/jtbb.44047},

issn = {2540-9581},

year  = {2019},

date = {2019-01-01},

journal = {Journal of Tropical Biodiversity and Biotechnology},

volume = {4},

number = {2},

pages = {42},

abstract = {Pisang Raja is an important local banana cultivar in the economy and cultural life in Indonesia, especially at Java. There are many Pisang Raja cultivars found on Java Island with various local names in each region, resulted in problems on taxonomic identification and grouping. Conventional research for grouping banana cultivars is still using morphological characters but considered inaccurate because of its subjectivity. This study aims to analyze the genetic diversity, grouping, and genome estimation of 13 local cultivars of Pisang Raja based on molecular approach using RAPD markers (OPA primers 1-20). Clustering and Principal Coordinates Analysis were performed to the amplified products using Paleontological Statistics (PAST) application version 3.15. Results showed that there were 12 primers which successfully amplified and produced DNA polymorphic bands in Pisang Raja, specifically OPA 1, OPA 2, OPA 3, OPA 4, OPA 5, OPA 8, OPA 16, OPA 17, OPA 18, OPA 19, and OPA 20. Pisang Raja cultivars considered have high genetic diversity, indicated by high polymorphic bands (95.17%) and low similarity coefficient values (0.2-0.6). Clustering and PCo analysis resulted in 3 clusters following its genomic group consist of AAA, AAB and ABB genomes, with Pisang Raja Bali as an outgroup (ABB). However, the separation of each cluster for genome inference was unclear. Cluster 1 consists of Pisang Raja Madu (AAB) and Raja Sereh (AAB). Cluster 2 consists of AAA and AAB genomes; includes Pisang Raja Jambe (AAA), Raja Kriyak (AAA), Raja Kutuk (AAB), Raja Brentel (AAB), Raja Seribu (AAB), and Raja Lini (AAB). Cluster 3 consists of AAA and AAB genomes, includes Pisang Raja Kisto (AAA), Raja Delima (AAA), Raja Bandung (AAB) and Raja Gareng (AAB). While Pisang Monyet (AAw) and Klutuk Wulung (BBw) as wild relatives were nested in Cluster 2. There were some different results of genome estimation based on RAPD markers compared to morphological characterization, and other molecular techniques. The use of RAPD markers is quite efficient and effective for studying genetic diversity and identifying genomes in bananas.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Inhibitors2018,

title = {Prediction of Novel Bioactive Compound from Zingiber officinale as Non-Nucleoside Reverse},

author = {Viol Dhea Kharisma and Luhur Septiadi},

doi = {10.11594/bbrj.01.02.05},

year  = {2018},

date = {2018-01-01},

journal = {Bioinformatics and Biomedical Research Journal},

volume = {1},

number = {2},

pages = {49--55},

abstract = {Human immunodeficiency virus 1 (HIV-1) is one of the viruses that causes AIDS in humans and disease outbreaks in this modern era. Reverse transcriptase (RT) enzyme though to be the functional enzyme that play a role

on the HIV-1 virus replication. Bioactive compounds contained on Ginger (Zingiber officinale) is known to inhibit viral replication. This study to determine the alternative bioactive compounds contained on Ginger (Zingiber

officinale) as a non-nucleoside reverse transcriptase (NNRTIs) HIV-1 inhibitors through computational study. The

reverse transcriptase (RT) enzyme model was retrieved from protein sequence database (PDB) and validated with

Ramachandran Plot and the compound contained on Ginger was retrieved from database. Analysis of molecular

docking, performed using PyRx and the interactions between Reverse Transcriptase (RT) enzyme of HIV-1 virus

and Zingiber officinale active compound was analyzed by PyMol and LigPlot+, also the drug-likeness molecule

properties with The Lipinski Rule’s of Five. From 24 active compound which have been docked, β-sitosterol

proven to be the most potential bioactive compound as inhibitors of Reverse Transcriptase (RT) enzyme because it

has more negative binding energy and the same amino acid residue with the control. β-sitosterol is predicted to be

used as non-nucleoside reverse transcriptase (NNRTIs) HIV-1 inhibitors},

keywords = {},

pubstate = {published},

tppubtype = {article}

}