2022 |
Vu, Minh Thiet; Geraldi, Almando; Do, Hoang Dang Khoa; Luqman, Arif; Nguyen, Hoang Danh; Fauzia, Faiza Nur; Amalludin, Fahmi Ikhlasul; Sadila, Aliffa Yusti; Wijaya, Nabilla Hapsari; Santoso, Heri; Manuhara, Yosephine Sri Wulan; Bui, Le Minh; Hariyanto, Sucipto; Wibowo, Anjar Tri Biology, 11 (695), pp. 1-14, 2022. @article{Vu2022, title = {Soil Mineral Composition and Salinity Are the Main Factors Regulating the Bacterial Community Associated with the Roots of Coastal Sand Dune Halophytes}, author = {Minh Thiet Vu and Almando Geraldi and Hoang Dang Khoa Do and Arif Luqman and Hoang Danh Nguyen and Faiza Nur Fauzia and Fahmi Ikhlasul Amalludin and Aliffa Yusti Sadila and Nabilla Hapsari Wijaya and Heri Santoso and Yosephine Sri Wulan Manuhara and Le Minh Bui and Sucipto Hariyanto and Anjar Tri Wibowo}, editor = {Christian Staehelin and James White}, url = {https://doi.org/10.3390/biology11050695}, doi = {https://doi.org/10.3390/biology11050695}, year = {2022}, date = {2022-04-30}, journal = {Biology}, volume = {11}, number = {695}, pages = {1-14}, abstract = {Soil salinity and mineral deficiency are major problems in agriculture. Many studies have reported that plant-associated microbiota, particularly rhizosphere and root microbiota, play a crucial role in tolerance against salinity and mineral deficiency. Nevertheless, there are still many unknown parts of plant\textendashmicrobe interaction, especially regarding their role in halophyte adaptation to coastal ecosystems. Here, we report the bacterial community associated with the roots of coastal sand dune halophytes Spinifex littoreus and Calotropis gigantea, and the soil properties that affect their composition. Strong correlations were observed between root bacterial diversity and soil mineral composition, especially with soil Calcium (Ca), Titanium (Ti), Cuprum (Cu), and Zinc (Zn) content. Soil Ti and Zn content showed a positive correlation with bacterial diversity, while soil Ca and Cu had a negative effect on bacterial diversity. A strong correlation was also found between the abundance of several bacterial species with soil salinity and mineral content, suggesting that some bacteria are responsive to changes in soil salinity and mineral content. Some of the identified bacteria, such as Bacillus idriensis and Kibdelosporangium aridum, are known to have growth-promoting effects on plants. Together, the findings of this work provided valuable information regarding bacterial communities associated with the roots of sand dune halophytes and their interactions with soil properties. Furthermore, we also identified several bacterial species that might be involved in tolerance against stresses. Further work will be focused on isolation and transplantation of these potential microbes, to validate their role in plant tolerance against stresses, not only in their native hosts but also in crops.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Soil salinity and mineral deficiency are major problems in agriculture. Many studies have reported that plant-associated microbiota, particularly rhizosphere and root microbiota, play a crucial role in tolerance against salinity and mineral deficiency. Nevertheless, there are still many unknown parts of plant–microbe interaction, especially regarding their role in halophyte adaptation to coastal ecosystems. Here, we report the bacterial community associated with the roots of coastal sand dune halophytes Spinifex littoreus and Calotropis gigantea, and the soil properties that affect their composition. Strong correlations were observed between root bacterial diversity and soil mineral composition, especially with soil Calcium (Ca), Titanium (Ti), Cuprum (Cu), and Zinc (Zn) content. Soil Ti and Zn content showed a positive correlation with bacterial diversity, while soil Ca and Cu had a negative effect on bacterial diversity. A strong correlation was also found between the abundance of several bacterial species with soil salinity and mineral content, suggesting that some bacteria are responsive to changes in soil salinity and mineral content. Some of the identified bacteria, such as Bacillus idriensis and Kibdelosporangium aridum, are known to have growth-promoting effects on plants. Together, the findings of this work provided valuable information regarding bacterial communities associated with the roots of sand dune halophytes and their interactions with soil properties. Furthermore, we also identified several bacterial species that might be involved in tolerance against stresses. Further work will be focused on isolation and transplantation of these potential microbes, to validate their role in plant tolerance against stresses, not only in their native hosts but also in crops. |
Bidiarti, Risna; Pranata, Syafroni; Fitmawati, KAJIAN ETNOKULINER TRADISIONAL LINGGA SEBAGAI PENOPANG PENGEMBANGAN PARIWISATA Journal Article Buletin Kebun Raya, 25 (1), pp. 44-56, 2022. @article{Bidiarti2022, title = {KAJIAN ETNOKULINER TRADISIONAL LINGGA SEBAGAI PENOPANG PENGEMBANGAN PARIWISATA}, author = {Risna Bidiarti and Syafroni Pranata and Fitmawati}, url = {http://publikasikr.lipi.go.id/index.php/buletin/article/view/780}, doi = {https://doi.org/10.14203/bkr.v25i1.780}, year = {2022}, date = {2022-04-30}, journal = {Buletin Kebun Raya}, volume = {25}, number = {1}, pages = {44-56}, abstract = {Masakan tradisional Lingga merupakan masakan khas melayu nusantara yang masih dipertahankan sampai sekarang, dan identik dengan wisata Lingga. Penelitian ini bertujuan untuk mengetahui jenis tumbuhan dan pemanfaatan lokalnya pada etnokuliner Lingga, dan didukung dengan analisis metabolit sekunder sebagai penunjang pengembangan wisata Lingga. Penelitian ini dilakukan pada Oktober 2019 hingga Februari 2020. Pengumpulan data dilakukan dengan wawancara kepada informan. Selanjutnya dilakukan identifikasi, pengujian senyawa metabolit sekunder, dan analisis data. Hasil penelitian didapatkan 35 varian makanan tradisional Lingga yang menggunakan tumbuhan sebagai bahan utama dalam masakan yaitu 16 famili dan 31 jenis. Makanan tersebut terdiri atas tiga kelompok yang terbagi menjadi tujuh makanan yaitu kue kering, kue basah, makanan pokok, lauk pauk, sayur mayur, dan makanan khas hari besar Islam. Masakan tradisional Lingga ini banyak menggunakan bagian tumbuhan seperti daun, batang, dan umbi. Famili tumbuhan yang sering digunakan dalam masakan tradisional Lingga adalah Arecaceae, Lamiaceae, Euphorbiaceae, dan Zingiberaceae. Famili tersebut memiliki khasiat obat dan digunakan dalam pengobatan tradisional oleh masyarakat Lingga. Hasil uji metabolit sekunder menunjukkan adanya kandungan senyawa alkaloid, flavonoid, saponin, steroid, terpenoid, dan tanin di dalam tumbuhan yang digunakan dalam masakan.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Masakan tradisional Lingga merupakan masakan khas melayu nusantara yang masih dipertahankan sampai sekarang, dan identik dengan wisata Lingga. Penelitian ini bertujuan untuk mengetahui jenis tumbuhan dan pemanfaatan lokalnya pada etnokuliner Lingga, dan didukung dengan analisis metabolit sekunder sebagai penunjang pengembangan wisata Lingga. Penelitian ini dilakukan pada Oktober 2019 hingga Februari 2020. Pengumpulan data dilakukan dengan wawancara kepada informan. Selanjutnya dilakukan identifikasi, pengujian senyawa metabolit sekunder, dan analisis data. Hasil penelitian didapatkan 35 varian makanan tradisional Lingga yang menggunakan tumbuhan sebagai bahan utama dalam masakan yaitu 16 famili dan 31 jenis. Makanan tersebut terdiri atas tiga kelompok yang terbagi menjadi tujuh makanan yaitu kue kering, kue basah, makanan pokok, lauk pauk, sayur mayur, dan makanan khas hari besar Islam. Masakan tradisional Lingga ini banyak menggunakan bagian tumbuhan seperti daun, batang, dan umbi. Famili tumbuhan yang sering digunakan dalam masakan tradisional Lingga adalah Arecaceae, Lamiaceae, Euphorbiaceae, dan Zingiberaceae. Famili tersebut memiliki khasiat obat dan digunakan dalam pengobatan tradisional oleh masyarakat Lingga. Hasil uji metabolit sekunder menunjukkan adanya kandungan senyawa alkaloid, flavonoid, saponin, steroid, terpenoid, dan tanin di dalam tumbuhan yang digunakan dalam masakan. |
Rizqi, Dewi Yuliana; Damayanti, Frisca; Cristy, Ghea Putri; Nurulita, Alisa Julia; Bagus, Aries; Sasongko, ; Semiarti, Endang; Tunjung, Woro Anindito Sri Growth of Kaffir Lime (Citrus hystrix DC) Cell Line Derived from Seed Explant After Yeast Elicitation Using Pure and Technical Grade Yeast Journal Article J. Tropical Biodiversity Biotechnology, 7 (1), pp. 1-14, 2022, ISSN: 2540-9581. @article{Rizqi2022, title = {Growth of Kaffir Lime (Citrus hystrix DC) Cell Line Derived from Seed Explant After Yeast Elicitation Using Pure and Technical Grade Yeast}, author = {Dewi Yuliana Rizqi and Frisca Damayanti and Ghea Putri Cristy and Alisa Julia Nurulita and Aries Bagus and Sasongko and Endang Semiarti and Woro Anindito Sri Tunjung}, url = {https://jurnal.ugm.ac.id/jtbb/article/view/68650}, doi = {https://doi.org/10.22146/jtbb.68650}, issn = {2540-9581}, year = {2022}, date = {2022-03-22}, journal = {J. Tropical Biodiversity Biotechnology}, volume = {7}, number = {1}, pages = {1-14}, abstract = {The addition of elicitors in kaffir lime (Citrus hystrix DC.) culture is one of strategies for obtaining and increasing the production of secondary metabolites. Saccharomyces cerevisiae is one of the elicitors that can be used to increase secondary metabolites such as terpenoids. However, in its use, the pure cultures of S. cerevisiae are expensive. Therefore, the first objective of this study was to analyze the ability of technical grade (commercial baker’s yeast) to be used as an elicitor and measure the growth of kaffir lime cell line after being elicited by pure and technical grade (commercial baker’s yeast). The second objective is to determine the best time to subculture kaffir lime cell line after elicitation. We observed the morphology and measured the growth curve of pure and technical grade yeast until the 4th subculture generation. Furthermore, we used both grades of yeast for elicitation. Kaffir lime cell suspension was treated with 10 ppm pure grade or 5 ppm and 10 ppm technical grade yeast for 4 days. After elicitation, kaffir lime cell lines were subcultured and their growth was analyzed. The result showed that the morphology and growth curve of technical grade until 4th subculture generations was similar to the pure grade. On the other hand, after elicitation using pure and technical grade yeast and being subcultured, the growth of the elicitated kaffir lime cell line had the same pattern as the control group, but the cell density of the control group was higher than the elicitated group. The initial stationary phase of kaffir lime cell line was on the 17th day which is the best time to subculture. The subculturing process is important to maintain the viability of the kaffir lime cell line.}, keywords = {}, pubstate = {published}, tppubtype = {article} } The addition of elicitors in kaffir lime (Citrus hystrix DC.) culture is one of strategies for obtaining and increasing the production of secondary metabolites. Saccharomyces cerevisiae is one of the elicitors that can be used to increase secondary metabolites such as terpenoids. However, in its use, the pure cultures of S. cerevisiae are expensive. Therefore, the first objective of this study was to analyze the ability of technical grade (commercial baker’s yeast) to be used as an elicitor and measure the growth of kaffir lime cell line after being elicited by pure and technical grade (commercial baker’s yeast). The second objective is to determine the best time to subculture kaffir lime cell line after elicitation. We observed the morphology and measured the growth curve of pure and technical grade yeast until the 4th subculture generation. Furthermore, we used both grades of yeast for elicitation. Kaffir lime cell suspension was treated with 10 ppm pure grade or 5 ppm and 10 ppm technical grade yeast for 4 days. After elicitation, kaffir lime cell lines were subcultured and their growth was analyzed. The result showed that the morphology and growth curve of technical grade until 4th subculture generations was similar to the pure grade. On the other hand, after elicitation using pure and technical grade yeast and being subcultured, the growth of the elicitated kaffir lime cell line had the same pattern as the control group, but the cell density of the control group was higher than the elicitated group. The initial stationary phase of kaffir lime cell line was on the 17th day which is the best time to subculture. The subculturing process is important to maintain the viability of the kaffir lime cell line. |
Dibha, Alyaa Farrah; Wahyuningsih, Sri; Kharisma, Viol Dhea; Ansori, Arif Nur Muhammad; Widyananda, Muhammad Hermawan; Parikesit, Arli Aditya; Rebezov, Maksim; Matrosova, Yulia; Artyukhova, Svetlana; Kenijz, Nadezhda; Kiseleva, Maria; Jakhmola, Vikash; Zainul, Rahadian Biological activity of kencur (Kaempferia galanga L.) against SARS-CoV-2 main protease Journal Article International Journal of Health Sciences, 6 (S1), pp. 468–480, 2022. @article{Dibha2022, title = {Biological activity of kencur (Kaempferia galanga L.) against SARS-CoV-2 main protease}, author = {Alyaa Farrah Dibha and Sri Wahyuningsih and Viol Dhea Kharisma and Arif Nur Muhammad Ansori and Muhammad Hermawan Widyananda and Arli Aditya Parikesit and Maksim Rebezov and Yulia Matrosova and Svetlana Artyukhova and Nadezhda Kenijz and Maria Kiseleva and Vikash Jakhmola and Rahadian Zainul}, url = {https://sciencescholar.us/journal/index.php/ijhs/article/view/4779}, doi = {https://doi.org/10.53730/ijhs.v6nS1.4779}, year = {2022}, date = {2022-03-15}, journal = {International Journal of Health Sciences}, volume = {6}, number = {S1}, pages = {468\textendash480}, abstract = {COVID-19 is a syndrome affecting pulmonary function but rather in serious conditions leads to death. Kencur (Kaempferia galanga L.) is a type of rhizome plant in Indonesia that is used as an herbal medicine called Jamu because it is believed to be able to cure various types of diseases. One of which is for anti-virus. The goal of this study was to see how effective the compounds in kencur are against COVID-19 with a molecular docking strategy. Kencur biological activities were obtained from the library and the design of the Acute Respiratory Syndrome Main protease (Mpro) has been gained from the protein data bank website. In addition, the biological activities in kencur were examined utilizing Lipinski's five-point concept was used to evaluate their substance molecular characteristics. Molecular docking analysis was performed with the PyRx Virtual Screening Tool software. The PyRx program was used for molecular docking simulation. While, the Discovery Studio Visualizer program was used to visualize the interaction between SARS-CoV-2 (Mpro) and the pharmacologically active metabolites in kencur. The docking evaluation on three antiviral substances revealed that Quercetin had the lowest binding energy when bound with Mpro and thus had the greatest potential as a viral inhibitor.}, keywords = {}, pubstate = {published}, tppubtype = {article} } COVID-19 is a syndrome affecting pulmonary function but rather in serious conditions leads to death. Kencur (Kaempferia galanga L.) is a type of rhizome plant in Indonesia that is used as an herbal medicine called Jamu because it is believed to be able to cure various types of diseases. One of which is for anti-virus. The goal of this study was to see how effective the compounds in kencur are against COVID-19 with a molecular docking strategy. Kencur biological activities were obtained from the library and the design of the Acute Respiratory Syndrome Main protease (Mpro) has been gained from the protein data bank website. In addition, the biological activities in kencur were examined utilizing Lipinski's five-point concept was used to evaluate their substance molecular characteristics. Molecular docking analysis was performed with the PyRx Virtual Screening Tool software. The PyRx program was used for molecular docking simulation. While, the Discovery Studio Visualizer program was used to visualize the interaction between SARS-CoV-2 (Mpro) and the pharmacologically active metabolites in kencur. The docking evaluation on three antiviral substances revealed that Quercetin had the lowest binding energy when bound with Mpro and thus had the greatest potential as a viral inhibitor. |
SOFIYANTI, NERY; FITMAWATI, ; ISDA, MAYTA NOVALIZA; AGESTI, ASIH RAHAYU AJENG; SARI, MAYA; Pranata, Syafroni Baccaurea Lour. (Phyllanthaceae Martinov-Malpighiales), underutilized plant from Riau, Indonesia and its phytochemical study Journal Article Biodiversitas, 23 (2), pp. 937-946, 2022, ISSN: 2085-4722. @article{Sofiyanti2022, title = {Baccaurea Lour. (Phyllanthaceae Martinov-Malpighiales), underutilized plant from Riau, Indonesia and its phytochemical study}, author = {NERY SOFIYANTI and FITMAWATI and MAYTA NOVALIZA ISDA and ASIH RAHAYU AJENG AGESTI and MAYA SARI and Syafroni Pranata }, url = {https://smujo.id/biodiv/article/view/9696}, doi = {DOI: 10.13057/biodiv/d230236}, issn = {2085-4722}, year = {2022}, date = {2022-02-28}, journal = {Biodiversitas}, volume = {23}, number = {2}, pages = { 937-946}, abstract = {Baccaurea Lour. (Phyllanthaceae Martinov-Malpighiales), underutilized plant from Riau, Indonesia and its phytochemical study. Biodiversitas 23: 937-946. Baccaurea (Phyllantaceae) is one of underutilized plants in Riau Province, Indonesia. Our finding in some districts shows the variation of morphological characters of Baccaurea members. However, there is no detailed morphological study of these genera reported from this province. This study aimed to identify Baccaurea species from Riau and characterized their morphology, as well as, phytochemical contents. The specimens were collected from the field, documented and observed in detail their morphological characters. Phytochemical screening had been conducted using qualitative tests of a total of six secondary metabolites (alkaloid, terpenoid, steroid, tannin, flavonoid and saponin). A total of seven Baccaurea species were identified in this study. The main characteristic that can be used to distinguish each species are leaf characteristics (venation, size and shape), floral pattern and fruit characters. The phytochemical contents vary among the examined Baccaurea. Steroid and tannin are absent from all of examined specimens. Terpenoid is commonly found in all fruit parts of all specimens. The result of this study provides the first detailed morphological record as well as phytochemical data of Baccaurea from Riau.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Baccaurea Lour. (Phyllanthaceae Martinov-Malpighiales), underutilized plant from Riau, Indonesia and its phytochemical study. Biodiversitas 23: 937-946. Baccaurea (Phyllantaceae) is one of underutilized plants in Riau Province, Indonesia. Our finding in some districts shows the variation of morphological characters of Baccaurea members. However, there is no detailed morphological study of these genera reported from this province. This study aimed to identify Baccaurea species from Riau and characterized their morphology, as well as, phytochemical contents. The specimens were collected from the field, documented and observed in detail their morphological characters. Phytochemical screening had been conducted using qualitative tests of a total of six secondary metabolites (alkaloid, terpenoid, steroid, tannin, flavonoid and saponin). A total of seven Baccaurea species were identified in this study. The main characteristic that can be used to distinguish each species are leaf characteristics (venation, size and shape), floral pattern and fruit characters. The phytochemical contents vary among the examined Baccaurea. Steroid and tannin are absent from all of examined specimens. Terpenoid is commonly found in all fruit parts of all specimens. The result of this study provides the first detailed morphological record as well as phytochemical data of Baccaurea from Riau. |
Hidayat, Saifullah; Wicaksono, Adhityo; Raharjeng, Anita; Jin, Desmond Soo Mun; Alam, Parvez; a, Bambang Retnoaji The Morphologies of Mudskipper Pelvic Fins in Relation to Terrestrial and Climbing Behaviour Journal Article Proceedings of the Zoological Society, 75 , pp. 83–93, 2022. @article{Hidayat2022, title = {The Morphologies of Mudskipper Pelvic Fins in Relation to Terrestrial and Climbing Behaviour}, author = {Saifullah Hidayat and Adhityo Wicaksono and Anita Raharjeng and Desmond Soo Mun Jin and Parvez Alam and Bambang Retnoaji a}, url = {https://link.springer.com/article/10.1007/s12595-021-00422-1#citeas}, doi = {https://doi.org/10.1007/s12595-021-00422-1}, year = {2022}, date = {2022-02-22}, journal = {Proceedings of the Zoological Society}, volume = {75}, pages = {83\textendash93}, abstract = {Two species of mudskipper are identified with different behaviours, which are related to their pelvic fin morphologies. Periophthalmus variabilis has unfused pelvic fins and is capable to climb on the vertical substrate. Another species, Boleophthalmus boddarti has fused pelvic fins which supports the fish mobility across the muddy substrate. In context of anatomy, both pelvic fins are composed of a frenum which covers the pelvic girdle and pelvic fin rays (lepidotrichia). The unfused pelvic fin of P. variabilis has split rays that are not interconnected, whereas the pelvic fins of B. boddarti are fused completely and the fin rays are merged to the skin. The pelvic fin ray bones of B. boddarti are composed of large bone structure, allowing it to function as a strong sitting pad on a semi-terrestrial substrate. Comparatively, in P. variabilis, the ray bones are shorter, hence provides flexibility to grip more surface area for the fish to stick during vertical locomotion. Histologically, the epidermal layer of B. boddarti pelvic fins has lower quantities of mucous cell than in P. variabilis, by 14.33 ± 1.53 and 33.33 ± 1.53 mucous cells per 100 epithelial cells, respectively. This difference reveals that more mucus is produced in P. variabilis, hence possibly giving this fish an enhanced capacity for Stefan adhesion on a terrestrial substrate than in B. boddarti. From this, the terrestrial locomotion and climbing ability are more supported in P. variabilis, compared to the more aquatic B. boddarti.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Two species of mudskipper are identified with different behaviours, which are related to their pelvic fin morphologies. Periophthalmus variabilis has unfused pelvic fins and is capable to climb on the vertical substrate. Another species, Boleophthalmus boddarti has fused pelvic fins which supports the fish mobility across the muddy substrate. In context of anatomy, both pelvic fins are composed of a frenum which covers the pelvic girdle and pelvic fin rays (lepidotrichia). The unfused pelvic fin of P. variabilis has split rays that are not interconnected, whereas the pelvic fins of B. boddarti are fused completely and the fin rays are merged to the skin. The pelvic fin ray bones of B. boddarti are composed of large bone structure, allowing it to function as a strong sitting pad on a semi-terrestrial substrate. Comparatively, in P. variabilis, the ray bones are shorter, hence provides flexibility to grip more surface area for the fish to stick during vertical locomotion. Histologically, the epidermal layer of B. boddarti pelvic fins has lower quantities of mucous cell than in P. variabilis, by 14.33 ± 1.53 and 33.33 ± 1.53 mucous cells per 100 epithelial cells, respectively. This difference reveals that more mucus is produced in P. variabilis, hence possibly giving this fish an enhanced capacity for Stefan adhesion on a terrestrial substrate than in B. boddarti. From this, the terrestrial locomotion and climbing ability are more supported in P. variabilis, compared to the more aquatic B. boddarti. |
Kharisma, Viol Dhea; Agatha, Aggy; Ansori, Arif Nur Muhammad; Widyananda, Muhammad Hermawan; Rizky, Wahyu Choirur; Dings, Tim Godefridus Antonius; Derkho, Marina; Lykasova, Irina; Antonius, Yulanda; Rosadi, Imam; Zainul, Rahadian J Pharm Pharmacogn Res, 10 (1), pp. 138-146, 2022. @article{Kharisma2022, title = {Herbal combination from Moringa oleifera Lam. and Curcuma longa L. as SARS-CoV-2 antiviral via dual inhibitor pathway: A viroinformatics approach}, author = {Viol Dhea Kharisma and Aggy Agatha and Arif Nur Muhammad Ansori and Muhammad Hermawan Widyananda and Wahyu Choirur Rizky and Tim Godefridus Antonius Dings and Marina Derkho and Irina Lykasova and Yulanda Antonius and Imam Rosadi and Rahadian Zainul}, url = {https://jppres.com/jppres/moringa-oleifera-and-curcuma-longa-versus-sars-cov-2/}, year = {2022}, date = {2022-02-01}, journal = {J Pharm Pharmacogn Res}, volume = {10}, number = {1}, pages = {138-146}, abstract = {Context: The COVID-19 outbreak is caused by the transmission and infection of SARS-CoV-2 at the end of 2019. It has led many countries to implement lockdown policies to prevent the viral spreading. Problems arise in a COVID-19 patient because of viral infection that leads to a systemic response in the immune system, specifically due to cytokine storm. Moreover, the antiviral drugs that have not been found. Indonesia had a variety of traditional medicines, such as is ‘jamu’. It consists of a mixture of natural ingredients such as Moringa oleifera Lam. and Curcuma longa L. Aims: To identify the activity of dual inhibitors as antiviral and anti-inflammatory agents from herbal combination compounds. Methods: Sample was collected from PubChem (NCBI, USA) and Protein Data Bank (PDB), then drug-likeness analysis using Lipinski rule of five in SCFBIO web server and bioactive probability analysis of bioactive compounds were conducted by PASS web server. Furthermore, the blind docking method was performed using PyRx 0.8 software to determine the binding activity and molecular interaction by PoseView web server and PyMol software v2.4.1 (Schr\"{o}dinger, Inc, USA). Results: Cryptochlorogenic acid and curcumin have been computationally proven as dual inhibitors for antivirals by inhibiting Mpro SARS-CoV-2 and as anti-inflammatory through inhibition of NFKB1 activity. However, the results are merely computational so that it must be validated through a wet lab research. Conclusions: The combination of Moringa oleifera Lam. and Curcuma longa L. is predicted to have antiviral and anti-inflammatory activity through dual inhibitor mechanism played by cryptochlorogenic acid and curcumin. Keywords: COVID-19; Curcuma longa; Moringa oleifera; Mpro; NFKB1. }, keywords = {}, pubstate = {published}, tppubtype = {article} } Context: The COVID-19 outbreak is caused by the transmission and infection of SARS-CoV-2 at the end of 2019. It has led many countries to implement lockdown policies to prevent the viral spreading. Problems arise in a COVID-19 patient because of viral infection that leads to a systemic response in the immune system, specifically due to cytokine storm. Moreover, the antiviral drugs that have not been found. Indonesia had a variety of traditional medicines, such as is ‘jamu’. It consists of a mixture of natural ingredients such as Moringa oleifera Lam. and Curcuma longa L. Aims: To identify the activity of dual inhibitors as antiviral and anti-inflammatory agents from herbal combination compounds. Methods: Sample was collected from PubChem (NCBI, USA) and Protein Data Bank (PDB), then drug-likeness analysis using Lipinski rule of five in SCFBIO web server and bioactive probability analysis of bioactive compounds were conducted by PASS web server. Furthermore, the blind docking method was performed using PyRx 0.8 software to determine the binding activity and molecular interaction by PoseView web server and PyMol software v2.4.1 (Schrödinger, Inc, USA). Results: Cryptochlorogenic acid and curcumin have been computationally proven as dual inhibitors for antivirals by inhibiting Mpro SARS-CoV-2 and as anti-inflammatory through inhibition of NFKB1 activity. However, the results are merely computational so that it must be validated through a wet lab research. Conclusions: The combination of Moringa oleifera Lam. and Curcuma longa L. is predicted to have antiviral and anti-inflammatory activity through dual inhibitor mechanism played by cryptochlorogenic acid and curcumin. Keywords: COVID-19; Curcuma longa; Moringa oleifera; Mpro; NFKB1. |
2021 |
Wicaksono, Adhityo; Parikesit, Arli Aditya Proceedings of the 5 th International Symposium on Bioinformatics 2021. @proceedings{Wicaksono2021d, title = {Plant Alkaloid Potential Antiviral Intercalating Drug Screening Through RNA-Ligand Molecular Docking Methods: Early Test on SARS-CoV-2 RNA Fragment}, author = {Adhityo Wicaksono and Arli Aditya Parikesit}, url = {http://insyb2021.bezmialem.edu.tr/}, year = {2021}, date = {2021-12-17}, organization = {Proceedings of the 5 th International Symposium on Bioinformatics }, abstract = {Many alkaloid compounds from plants have been recognized as the intercalating agents for DNAand RNA. In in silico study of molecular docking for drug design and discovery, pathogenrelatedproteins are often used as receptors and tested against small molecules or ligands, such as antibiotics and metabolites. However, nucleic acid-ligand docking is understudied, in its infancy,thus requiring further attention. This study uses 8 plant alkaloid compounds (berberine, caffeine,colchicine, nicotine, solanine, theobromine, theophylline, and tomatine) as ligands to dock againsta fragment of SARS-CoV-2 RNA (PDB: 6XRZ). The 8 compounds were first screened to understand the drug-likeness nature using Lipinski rule of five (LRO5), then their bioavailability,and synthetic accessibility using online web server, SwissADME. Then, the compounds and RNAwere converted using Open Babel for molecular docking preparation using PyRx \textendash Autodock Vina wizard. The docking results were tested using AnnapuRNA for docking scores, andinteractions were viewed using PyMOL, BIOVIA Discovery Studio, and fingeRNAt. During screening, 6 of 8 compounds obey LRO5, and have good bioavailability and synthetic accessibility values, except solanine and tomatine, due to high molecular weights, number of hydrogen donor-acceptor amounts, and appear to be very complex compound to enter the bloodstream and to synthesize. After molecular docking, berberine, solanine, and tomatine are thetop 3 in docking results, although tomatine has the most hydrogen bonds interaction with the RNA.}, keywords = {}, pubstate = {published}, tppubtype = {proceedings} } Many alkaloid compounds from plants have been recognized as the intercalating agents for DNAand RNA. In in silico study of molecular docking for drug design and discovery, pathogenrelatedproteins are often used as receptors and tested against small molecules or ligands, such as antibiotics and metabolites. However, nucleic acid-ligand docking is understudied, in its infancy,thus requiring further attention. This study uses 8 plant alkaloid compounds (berberine, caffeine,colchicine, nicotine, solanine, theobromine, theophylline, and tomatine) as ligands to dock againsta fragment of SARS-CoV-2 RNA (PDB: 6XRZ). The 8 compounds were first screened to understand the drug-likeness nature using Lipinski rule of five (LRO5), then their bioavailability,and synthetic accessibility using online web server, SwissADME. Then, the compounds and RNAwere converted using Open Babel for molecular docking preparation using PyRx – Autodock Vina wizard. The docking results were tested using AnnapuRNA for docking scores, andinteractions were viewed using PyMOL, BIOVIA Discovery Studio, and fingeRNAt. During screening, 6 of 8 compounds obey LRO5, and have good bioavailability and synthetic accessibility values, except solanine and tomatine, due to high molecular weights, number of hydrogen donor-acceptor amounts, and appear to be very complex compound to enter the bloodstream and to synthesize. After molecular docking, berberine, solanine, and tomatine are thetop 3 in docking results, although tomatine has the most hydrogen bonds interaction with the RNA. |
Wibowo, Anjar Tri; Nugrahapraja, Husna; Wahyuono, Ruri Agung; Islami, Izzatul; Haekal, Muhammad Husain; Fardiansyah, Yasri; Sugiyo, Pramudya Wisnu Wicaksono; Putro, Yohanes Kartjito; Fauzia, Faiza Nur; Santoso, Heri; Götz, Friedrich; Tangahu, Bieby Voijant; Luqman, Arif Microplastic Contamination in the Human Gastrointestinal Tract and Daily Consumables Associated with an Indonesian Farming Community Journal Article Sustainability, 13 (12840), pp. 1-10, 2021. @article{Wibowo2021, title = {Microplastic Contamination in the Human Gastrointestinal Tract and Daily Consumables Associated with an Indonesian Farming Community}, author = {Anjar Tri Wibowo and Husna Nugrahapraja and Ruri Agung Wahyuono and Izzatul Islami and Muhammad Husain Haekal and Yasri Fardiansyah and Pramudya Wisnu Wicaksono Sugiyo and Yohanes Kartjito Putro and Faiza Nur Fauzia and Heri Santoso and Friedrich G\"{o}tz and Bieby Voijant Tangahu and Arif Luqman}, doi = {https://doi.org/10.3390/su132212840}, year = {2021}, date = {2021-11-19}, journal = {Sustainability}, volume = {13}, number = {12840}, pages = {1-10}, abstract = {Plastic is one of the most abundant pollutants in the environment. As a result of natural physical processes, large plastic waste is degraded into microsized particles (<5 mm) called microplastics. Because of their size, abundance, and durability, microplastics are widely distributed in the environment, contaminating food and water intended for human consumption. The extent of microplastic contamination in the human body is still unclear because there are few studies concerning microplastic contamination in human specimens and, in most studies, data were collected from city dwellers. Despite having the fourth largest population and being the fourth largest plastic waste producer in the world and second largest plastic polluter in the ocean, there are currently no data with respect to microplastic exposure for the Indonesian population. Several studies have reported on microplastic contamination in seafood and freshwater organisms from Indonesia, and it is likely that microplastics have contaminated the gastrointestinal tracts of Indonesians. Using Raman spectroscopy, we detected microplastic contamination in 7 out of 11 analyzed stool samples collected from a farming community in the highland village of Pacet, East Java, Indonesia. Polypropylene (PP) was the most abundant and prevalent type of microplastic observed, and it was found in four of the positive samples with an average concentration of 10.19 microgram per gram of feces (µg/g). Microplastics were also detected at high concentrations in tempeh (soybean cake, a staple protein source for Indonesians), table salts, and toothpaste, which were regularly consumed and used by the study participants. PP was particularly high in table salts (2.6 µg/g) and toothpaste (15.42 µg/g), suggesting that these products might contribute to the gastrointestinal contamination in the studied population. This pilot study indicated microplastic contamination in the rural Indonesian population and in their daily consumables, demonstrating the far-reaching extent of microplastic pollution beyond urban areas.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Plastic is one of the most abundant pollutants in the environment. As a result of natural physical processes, large plastic waste is degraded into microsized particles (<5 mm) called microplastics. Because of their size, abundance, and durability, microplastics are widely distributed in the environment, contaminating food and water intended for human consumption. The extent of microplastic contamination in the human body is still unclear because there are few studies concerning microplastic contamination in human specimens and, in most studies, data were collected from city dwellers. Despite having the fourth largest population and being the fourth largest plastic waste producer in the world and second largest plastic polluter in the ocean, there are currently no data with respect to microplastic exposure for the Indonesian population. Several studies have reported on microplastic contamination in seafood and freshwater organisms from Indonesia, and it is likely that microplastics have contaminated the gastrointestinal tracts of Indonesians. Using Raman spectroscopy, we detected microplastic contamination in 7 out of 11 analyzed stool samples collected from a farming community in the highland village of Pacet, East Java, Indonesia. Polypropylene (PP) was the most abundant and prevalent type of microplastic observed, and it was found in four of the positive samples with an average concentration of 10.19 microgram per gram of feces (µg/g). Microplastics were also detected at high concentrations in tempeh (soybean cake, a staple protein source for Indonesians), table salts, and toothpaste, which were regularly consumed and used by the study participants. PP was particularly high in table salts (2.6 µg/g) and toothpaste (15.42 µg/g), suggesting that these products might contribute to the gastrointestinal contamination in the studied population. This pilot study indicated microplastic contamination in the rural Indonesian population and in their daily consumables, demonstrating the far-reaching extent of microplastic pollution beyond urban areas. |
Kharisma, Viol Dhea; Ansori, Arif Nur Muhammad; Probojati, Rasyadan Taufiq; Turista, Dora Dayu Rahma; Antonius, Yulanda Concept of SARS-CoV-2 Vaccine Design to Fight COVID-19 Pandemic: A Review Insight Journal Article Indian Journal of Forensic Medicine & Toxicology, 15 (4), pp. 2797-2803, 2021. @article{Kharisma2021, title = {Concept of SARS-CoV-2 Vaccine Design to Fight COVID-19 Pandemic: A Review Insight}, author = {Viol Dhea Kharisma and Arif Nur Muhammad Ansori and Rasyadan Taufiq Probojati and Dora Dayu Rahma Turista and Yulanda Antonius}, doi = {10.37506/ijfmt.v15i4.17127}, year = {2021}, date = {2021-11-17}, journal = {Indian Journal of Forensic Medicine & Toxicology}, volume = {15}, number = {4}, pages = {2797-2803}, abstract = {Cluster of pneumonia infection emerged in Wuhan, China due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Additionally, more than 190 countries have confirmed 82 million cases of SARS-CoV-2 infection. Currently, there is a SARS-CoV-2 epidemic, and no effective prophylactic methods are available. A vaccine is considered as an effective method to restrict an epidemic. Several vaccine designing techniques have been established, which is enabling researchers from various institutes for developing vaccine towards SARS-CoV-2 infections. In this review, we condense the development of vaccine research against SARS-CoV-2.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Cluster of pneumonia infection emerged in Wuhan, China due to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Additionally, more than 190 countries have confirmed 82 million cases of SARS-CoV-2 infection. Currently, there is a SARS-CoV-2 epidemic, and no effective prophylactic methods are available. A vaccine is considered as an effective method to restrict an epidemic. Several vaccine designing techniques have been established, which is enabling researchers from various institutes for developing vaccine towards SARS-CoV-2 infections. In this review, we condense the development of vaccine research against SARS-CoV-2. |
Ansori, Arif NM; Kharisma, Viol Dhea; Fadholly, Amaq; Tacharina, Martia; Antonius, Yulanda; Parikesit, Arli Aditya Severe Acute Respiratory Syndrome Coronavirus-2 Emergence and Its Treatment with Alternative Medicines: A Review Journal Article Research Journal of Pharmacy and Technology, pp. 5551-5557, 2021. @article{Ansori2021ab, title = {Severe Acute Respiratory Syndrome Coronavirus-2 Emergence and Its Treatment with Alternative Medicines: A Review}, author = {Arif NM Ansori and Viol Dhea Kharisma and Amaq Fadholly and Martia Tacharina and Yulanda Antonius and Arli Aditya Parikesit }, doi = {http://dx.doi.org/10.52711/0974-360X.2021.00967}, year = {2021}, date = {2021-10-06}, journal = {Research Journal of Pharmacy and Technology}, pages = {5551-5557}, abstract = {Known as the causal factor of the recent global COVID-19 pandemic, any SARS-CoV-2 is not the only coronavirus that has constituted a menace to society and taken thousands of human lives. Two previous pandemics were also led by coronaviruses; such as the MERS-CoV in 2012 and another SARS-CoV in 2002. Only five months into existence, SARS-CoV-2 transmitted infection to approximately 75 million people and it has led to more than 1.5 million of deaths all over the world. Unfortunately, there has not been any specific treatment yet for COVID-19 yet and its control is purely empirical. The examinations of the parity between SARS-CoV-2 and SARS-CoV, in terms of their genomics, origin, epidemiology, and pathogenesis, suggested that we may use the previous data of MERS-CoV or SARS-CoV as a guideline for uncovering the effective approach to strive against SARS-CoV-2. Various studies have reported the positive effects of numerous phytochemical compounds against SARS-CoV and MERS-CoV. Interestingly, this idea has been emplyed for SARS-CoV-2, and in silico screening of phytochemical compounds has been performed for identifying the potential candidates for COVID-19 treatment. Curcumin is an example of a natural compound which was demonstrated as potent candidate contrary to SARS-CoV-2 protease derived from the in silico studies. Herein, the occurrence of SARS-CoV-2 and the aplication of alternative medicines for treating coronavirus diseases are briefly reviewed.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Known as the causal factor of the recent global COVID-19 pandemic, any SARS-CoV-2 is not the only coronavirus that has constituted a menace to society and taken thousands of human lives. Two previous pandemics were also led by coronaviruses; such as the MERS-CoV in 2012 and another SARS-CoV in 2002. Only five months into existence, SARS-CoV-2 transmitted infection to approximately 75 million people and it has led to more than 1.5 million of deaths all over the world. Unfortunately, there has not been any specific treatment yet for COVID-19 yet and its control is purely empirical. The examinations of the parity between SARS-CoV-2 and SARS-CoV, in terms of their genomics, origin, epidemiology, and pathogenesis, suggested that we may use the previous data of MERS-CoV or SARS-CoV as a guideline for uncovering the effective approach to strive against SARS-CoV-2. Various studies have reported the positive effects of numerous phytochemical compounds against SARS-CoV and MERS-CoV. Interestingly, this idea has been emplyed for SARS-CoV-2, and in silico screening of phytochemical compounds has been performed for identifying the potential candidates for COVID-19 treatment. Curcumin is an example of a natural compound which was demonstrated as potent candidate contrary to SARS-CoV-2 protease derived from the in silico studies. Herein, the occurrence of SARS-CoV-2 and the aplication of alternative medicines for treating coronavirus diseases are briefly reviewed. |
Wijaya, Renadya Maulani; Hafidzhah, Muhammad Aldino; Kharisma, Viol Dhea; Ansori, Arif Nur Muhammad; Parikesit, Arli Aditya COVID-19 In Silico Drug with Zingiber officinale Natural Product Compound Library Targeting the Mpro Protein Journal Article Makara Journal of Science, 25 (3), pp. 162-171, 2021. @article{Wijaya2021, title = {COVID-19 In Silico Drug with Zingiber officinale Natural Product Compound Library Targeting the Mpro Protein}, author = {Renadya Maulani Wijaya and Muhammad Aldino Hafidzhah and Viol Dhea Kharisma and Arif Nur Muhammad Ansori and Arli Aditya Parikesit}, url = {https://scholarhub.ui.ac.id/science/vol25/iss3/5?utm_source=scholarhub.ui.ac.id%2Fscience%2Fvol25%2Fiss3%2F5&utm_medium=PDF&utm_campaign=PDFCoverPages}, doi = {https://doi.org/10.7454/mss.v25i3.1244}, year = {2021}, date = {2021-09-30}, journal = {Makara Journal of Science}, volume = {25}, number = {3}, pages = {162-171}, abstract = {Coronavirus disease 2019 (COVID-19), which is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has become a worldwide pandemic. Ginger (Zingiber officinale) is a rhizome, which is commonly used for culinary and medicinal purposes. In Indonesia, ginger is taken as traditional medicine by processing it into a drink known as jamu. The present study aimed to assess and evaluate the bioactive compounds in ginger that can be used in drug design for treating COVID-19. The crystal structure of the SARS-CoV-2 main protease (Mpro) was generated from a protein sequence database, i.e., Protein Data Bank, and the bioactive compounds in ginger were derived from the existing compounds library. Mpro is involved in polyprotein synthesis, including viral maturation and nonstructural protein gluing, making it a potential antiviral target. Furthermore, the bioactive compounds in ginger were analyzed using Lipinski’s rule of five to determine their drug-like molecular properties. Moreover, molecular docking analysis was conducted using the Python Prescription 0.8 (Virtual Screening Tool) software, and the interaction between SARS-CoV-2 Mpro and the bioactive compounds in ginger was extensively examined using the PyMOL software. Out all of the 16 bioactive compounds that were docked successfully, 4-gingerol, which has the lowest binding energy against SARS-CoV-2 Mpro, as per the virtual screening results, was proven to have the most potential as a viral inhibitor of SARS-CoV-2}, keywords = {}, pubstate = {published}, tppubtype = {article} } Coronavirus disease 2019 (COVID-19), which is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has become a worldwide pandemic. Ginger (Zingiber officinale) is a rhizome, which is commonly used for culinary and medicinal purposes. In Indonesia, ginger is taken as traditional medicine by processing it into a drink known as jamu. The present study aimed to assess and evaluate the bioactive compounds in ginger that can be used in drug design for treating COVID-19. The crystal structure of the SARS-CoV-2 main protease (Mpro) was generated from a protein sequence database, i.e., Protein Data Bank, and the bioactive compounds in ginger were derived from the existing compounds library. Mpro is involved in polyprotein synthesis, including viral maturation and nonstructural protein gluing, making it a potential antiviral target. Furthermore, the bioactive compounds in ginger were analyzed using Lipinski’s rule of five to determine their drug-like molecular properties. Moreover, molecular docking analysis was conducted using the Python Prescription 0.8 (Virtual Screening Tool) software, and the interaction between SARS-CoV-2 Mpro and the bioactive compounds in ginger was extensively examined using the PyMOL software. Out all of the 16 bioactive compounds that were docked successfully, 4-gingerol, which has the lowest binding energy against SARS-CoV-2 Mpro, as per the virtual screening results, was proven to have the most potential as a viral inhibitor of SARS-CoV-2 |
Wicaksono, Adhityo; Raihandhany, Reza; da Silva, Jaime Teixeira A Kopyor versus macapuno coconuts: are these two edible mutants of Southeast Asia the same? Journal Article Planta, 254 (86), 2021. @article{Wicaksono2021ab, title = {Kopyor versus macapuno coconuts: are these two edible mutants of Southeast Asia the same?}, author = {Adhityo Wicaksono and Reza Raihandhany and Jaime A. Teixeira da Silva }, url = {https://link.springer.com/article/10.1007/s00425-021-03740-y#citeas}, doi = {https://doi.org/10.1007/s00425-021-03740-y}, year = {2021}, date = {2021-09-28}, journal = {Planta}, volume = {254}, number = {86}, abstract = {Coconut (Cocos nucifera L.; Arecaceae), a widely distributed plant with popular culinary applications, especially of the endosperm, has several nutritional and medicinal benefits. Two coconut mutants are widely recognized in Southeast Asia, namely kopyor and macapuno, specifically in Indonesia and Philippines, respectively. Kopyor coconut is known for its brittle solid endosperm while macapuno coconut is known for its gelatinous solid endosperm. Both mutant types have many other synonyms in other countries. Over many decades, the biology of macapuno coconut, including endosperm anatomy, histology, cytology, physiology, and genetics have been described, while kopyor coconut is still understudied. However, some literature and websites erroneously describe kopyor as macapuno coconut, or consider them interchangeably, which is an unintentional consequence of insufficient scientific research on these coconut mutants. Additionally, in Indonesia, there is another local mutant in Banten called wax coconut (“kelapa lilin”) that some researchers claim as the actual Indonesian macapuno coconut due to its strong resemblance to kopyor coconut. Unfortunately, wax coconut is not only understudied, it is rarely documented. Additional evidence of their differences, in terms of morphological, biochemical and genetic characteristics, is needed. Moreover, clear documentation will also be needed for a better comparison. Understanding the differences between kopyor and macapuno coconuts will not only help to further clarify their scientific description in the literature, but will also guide locals, researchers, and industries to characterize similar mutants, if found in specific regions, for future study and bioprospecting.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Coconut (Cocos nucifera L.; Arecaceae), a widely distributed plant with popular culinary applications, especially of the endosperm, has several nutritional and medicinal benefits. Two coconut mutants are widely recognized in Southeast Asia, namely kopyor and macapuno, specifically in Indonesia and Philippines, respectively. Kopyor coconut is known for its brittle solid endosperm while macapuno coconut is known for its gelatinous solid endosperm. Both mutant types have many other synonyms in other countries. Over many decades, the biology of macapuno coconut, including endosperm anatomy, histology, cytology, physiology, and genetics have been described, while kopyor coconut is still understudied. However, some literature and websites erroneously describe kopyor as macapuno coconut, or consider them interchangeably, which is an unintentional consequence of insufficient scientific research on these coconut mutants. Additionally, in Indonesia, there is another local mutant in Banten called wax coconut (“kelapa lilin”) that some researchers claim as the actual Indonesian macapuno coconut due to its strong resemblance to kopyor coconut. Unfortunately, wax coconut is not only understudied, it is rarely documented. Additional evidence of their differences, in terms of morphological, biochemical and genetic characteristics, is needed. Moreover, clear documentation will also be needed for a better comparison. Understanding the differences between kopyor and macapuno coconuts will not only help to further clarify their scientific description in the literature, but will also guide locals, researchers, and industries to characterize similar mutants, if found in specific regions, for future study and bioprospecting. |
Hasan, Veryl; de Vieira, Lucas Oliveira; Ottoni, Felipe Polivanov; Masithah, Endang Dewi Int. J. Aquat. Biol., 9 (4), pp. 244-247, 2021, ISSN: 2322-5270. @article{Hasan2021, title = {Two new localities for Lobocheilos falcifer (Valenciennes, 1842) (Teleostei: Cyprinidae), a rare and vulnerable freshwater fish species of Java, Indonesia}, author = {Veryl Hasan and Lucas de Oliveira Vieira and Felipe Polivanov Ottoni and Endang Dewi Masithah}, url = {https://doi.org/10.22034/ijab.v9i4.1285}, doi = {https://doi.org/10.22034/ijab.v9i4.1285}, issn = {2322-5270}, year = {2021}, date = {2021-08-25}, journal = {Int. J. Aquat. Biol.}, volume = {9}, number = {4}, pages = { 244-247}, abstract = {Lobocheilos falcifer is a rare and vulnerable freshwater fish species from Java, Indonesia and currently listed as Vulnerable (VU) within the IUCN Red List. In 2019, three specimens of L. falcifer were collected and photographed on Rawa Pening Lake, Semarang Regency, Central Java Province and Solo River, Karanganyar Regency, Central Java Province as two new localities for this species, extending its distribution in about 80 km to southeast. We also provided the morphological data of this species as well.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Lobocheilos falcifer is a rare and vulnerable freshwater fish species from Java, Indonesia and currently listed as Vulnerable (VU) within the IUCN Red List. In 2019, three specimens of L. falcifer were collected and photographed on Rawa Pening Lake, Semarang Regency, Central Java Province and Solo River, Karanganyar Regency, Central Java Province as two new localities for this species, extending its distribution in about 80 km to southeast. We also provided the morphological data of this species as well. |
Nurtjahyani, Supiana Dian; Probojati, Rasyadan Taufiq; Ansori, Arif Nur Muhammad; Amin, Mochammad; Handajani, Retno Haplotype Network Analysis and Phylogenetic Tree Construction of Hepatitis C Virus (HCV) Isolated from Tuban, Indonesia Journal Article Research J. Pharm. and Tech. , 14 (8), pp. 4231-4235, 2021, ISSN: 0974-3618 . @article{Nurtjahyani2021, title = {Haplotype Network Analysis and Phylogenetic Tree Construction of Hepatitis C Virus (HCV) Isolated from Tuban, Indonesia}, author = {Supiana Dian Nurtjahyani and Rasyadan Taufiq Probojati and Arif Nur Muhammad Ansori and Mochammad Amin and Retno Handajani}, url = {https://www.proquest.com/openview/108fa42e8fd99631652b05c590287236/1?pq-origsite=gscholar&cbl=1096441}, doi = {10.52711/0974-360X.2021.00734}, issn = {0974-3618 }, year = {2021}, date = {2021-08-12}, journal = {Research J. Pharm. and Tech. }, volume = {14}, number = {8}, pages = {4231-4235}, abstract = {This study aimed to analyzed the haplotype network and constructed the phylogenetic tree topology of hepatitis C virus (HCV) in Tuban, Indonesia and those from other countries, to determine the visualize genealogical relationship and inference about gene connected. The HCV isolates were collected from blood transfusion center of Tuban, East Java, Indonesia in 2015 and as a comparison, also the sequences of HCV isolates were retrieved from the GenBank®, National Center of Biotechnology Information (NCBI), USA database. To constructed of distribution map was performed through median joining analysis using Haplotype Network v4.6, whereas to constructed and phylogenetic model analyses were constructed based on the NS5B and 5’UTR regions using MEGA X, maximum-likelihood method based on the Tamura-Nei model. In the HCV NS5B region haplotype network showed high haplotype diversity (Hd=1.00) in 22 haplotypes. Based on phylogenetic analysis 3 sample isolates Tuban (BDT-55-p23, BDT-79-p23 and BDT-112-p23) were identified one group and closely related to isolates from Indonesia. However, isolates Tuban also have the same sequence characters as the isolates from Thailand. It was also confirmed in haplotype network that the three isolates are connected to each other. The identification of HCV genotypes circulating in blood donors in the Tuban of East Java confirmed were closely related to HCV isolates from Indonesia and Thailand. Therefore, this result might contribute in a better medical management towards HCV.}, keywords = {}, pubstate = {published}, tppubtype = {article} } This study aimed to analyzed the haplotype network and constructed the phylogenetic tree topology of hepatitis C virus (HCV) in Tuban, Indonesia and those from other countries, to determine the visualize genealogical relationship and inference about gene connected. The HCV isolates were collected from blood transfusion center of Tuban, East Java, Indonesia in 2015 and as a comparison, also the sequences of HCV isolates were retrieved from the GenBank®, National Center of Biotechnology Information (NCBI), USA database. To constructed of distribution map was performed through median joining analysis using Haplotype Network v4.6, whereas to constructed and phylogenetic model analyses were constructed based on the NS5B and 5’UTR regions using MEGA X, maximum-likelihood method based on the Tamura-Nei model. In the HCV NS5B region haplotype network showed high haplotype diversity (Hd=1.00) in 22 haplotypes. Based on phylogenetic analysis 3 sample isolates Tuban (BDT-55-p23, BDT-79-p23 and BDT-112-p23) were identified one group and closely related to isolates from Indonesia. However, isolates Tuban also have the same sequence characters as the isolates from Thailand. It was also confirmed in haplotype network that the three isolates are connected to each other. The identification of HCV genotypes circulating in blood donors in the Tuban of East Java confirmed were closely related to HCV isolates from Indonesia and Thailand. Therefore, this result might contribute in a better medical management towards HCV. |
Ansori, Arif Nur Muhammad; Kharisma, Viol Dhea; Solikhah, Tridiganita Intan Medicinal properties of Muntingia calabura L.: A Review Journal Article Research J. Pharm. and Tech. , 14 (8), pp. 4505-4508, 2021, ISSN: 0974-3618 . @article{Ansori2021e, title = {Medicinal properties of Muntingia calabura L.: A Review}, author = {Arif Nur Muhammad Ansori and Viol Dhea Kharisma and Tridiganita Intan Solikhah}, doi = {10.52711/0974-360X.2021.00784}, issn = {0974-3618 }, year = {2021}, date = {2021-08-12}, journal = {Research J. Pharm. and Tech. }, volume = {14}, number = {8}, pages = {4505-4508}, abstract = {Indonesia has abundant medicinal plants, which have been historically used by the population in treating diseases for generations. Traditional Indonesian medicine and the medicinal plants used could lead to the discovery of novel drugs. For example, Muntingia calabura L., also known as kersen, is a well-known medicinal plant that has been used to treat various diseases worldwide. The pharmacological activities and phytochemical composition of the whole plant of M. calabura L. have been investigated and identified by scientists in recent decades. These studies have established the therapeutic potential of kersen for drug discovery. This present review provides an overview of the ethnopharmacology, pharmacology, and phytochemistry of M. calabura L. as they relate to its use against severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2).}, keywords = {}, pubstate = {published}, tppubtype = {article} } Indonesia has abundant medicinal plants, which have been historically used by the population in treating diseases for generations. Traditional Indonesian medicine and the medicinal plants used could lead to the discovery of novel drugs. For example, Muntingia calabura L., also known as kersen, is a well-known medicinal plant that has been used to treat various diseases worldwide. The pharmacological activities and phytochemical composition of the whole plant of M. calabura L. have been investigated and identified by scientists in recent decades. These studies have established the therapeutic potential of kersen for drug discovery. This present review provides an overview of the ethnopharmacology, pharmacology, and phytochemistry of M. calabura L. as they relate to its use against severe acute respiratory syndrome-coronavirus 2 (SARS-CoV-2). |
Wicaksono, Adhityo; Raihandhany, Reza; Aryantha., Nyoman Pugeg I Jurnal Mikologi Indonesia, 5 (1), pp. 7-15, 2021, ISSN: 2579-8766. @article{Adhityo2021a, title = {Upaya Kultivasi Jamur Morel (Morchella esculenta (L.) Pers.) dari Kawasan Lembang, Jawa Barat dan Optimasi Pertumbuhannya dengan Menggunakan Media Pati}, author = {Adhityo Wicaksono and Reza Raihandhany and I Nyoman Pugeg Aryantha.}, url = {https://www.researchgate.net/publication/353598114_Upaya_Kultivasi_Jamur_Morel_Morchella_esculenta_L_Pers_dari_Kawasan_Lembang_Jawa_Barat_dan_Optimasi_Pertumbuhannya_dengan_Menggunakan_Media_Pati}, doi = {10.46638}, issn = {2579-8766}, year = {2021}, date = {2021-07-31}, journal = {Jurnal Mikologi Indonesia}, volume = {5}, number = {1}, pages = {7-15}, abstract = {Jamur morel (Morchella esculenta (L.) Pers.) memiliki nilai gizi yang baik dan bernilai jual tinggi dari segi industri kuliner. Di Indonesia, jamur ini telah ditemukan di kawasan Gunung Rinjani, Nusa Tenggara Barat, dan di kawasan Lembang, Jawa Barat, yang menjadi spesimen dalam penelitian ini. Penelitian ini bertujuan untuk mencoba menginokulasi jamur morel pada media kultur murni, media bibit induk, dan media tanam. Kemudian pertumbuhan miselia dan laju tumbuhnyadiamati pada media karbohidrat yang dibuat dari tepung terigu, beras, maizena, dan tapioka pada cawan Petri. Kultur murni dengan menggunakan media agar dekstrosa kentang di cawan Petri telah membuahkan hasil, sebagaimana jamur morel telah membentuk miselia dan sklerotia pada media kultur. Hasil positif juga ditemukan pada tahap lanjutan, yaitu kultur bibit induk dengan media buah kapuk dan dedak. Akan tetapi, upaya kultur di baglog berisi media tanah kompos belum membuahkan hasil, sehinggaperlu diteliti lebih lanjut dan dilakukan optimasi. Pada percobaan optimasi media karbohidrat, miselia jamur morel tumbuh paling baik pada media tepung terigu, kemudian tepung beras, dan paling sedikit pada tepung maizena. Miselia tidak tumbuhpada media tepung tapioka. }, keywords = {}, pubstate = {published}, tppubtype = {article} } Jamur morel (Morchella esculenta (L.) Pers.) memiliki nilai gizi yang baik dan bernilai jual tinggi dari segi industri kuliner. Di Indonesia, jamur ini telah ditemukan di kawasan Gunung Rinjani, Nusa Tenggara Barat, dan di kawasan Lembang, Jawa Barat, yang menjadi spesimen dalam penelitian ini. Penelitian ini bertujuan untuk mencoba menginokulasi jamur morel pada media kultur murni, media bibit induk, dan media tanam. Kemudian pertumbuhan miselia dan laju tumbuhnyadiamati pada media karbohidrat yang dibuat dari tepung terigu, beras, maizena, dan tapioka pada cawan Petri. Kultur murni dengan menggunakan media agar dekstrosa kentang di cawan Petri telah membuahkan hasil, sebagaimana jamur morel telah membentuk miselia dan sklerotia pada media kultur. Hasil positif juga ditemukan pada tahap lanjutan, yaitu kultur bibit induk dengan media buah kapuk dan dedak. Akan tetapi, upaya kultur di baglog berisi media tanah kompos belum membuahkan hasil, sehinggaperlu diteliti lebih lanjut dan dilakukan optimasi. Pada percobaan optimasi media karbohidrat, miselia jamur morel tumbuh paling baik pada media tepung terigu, kemudian tepung beras, dan paling sedikit pada tepung maizena. Miselia tidak tumbuhpada media tepung tapioka. |
Kharisma, Viol Dhea; Ansori, Arif Nur Muhammad; Dian, Farida Aryani; Rizky, Wahyu Choirur; Dings, Tim Godefridus Antonius; Zainul, Rahadian; Nugraha, Alexander Patera Biochem. Cell. Arch., 21 (2), pp. 3323-3327, 2021, ISSN: 0972-5075. @article{Kharisma2021a, title = {MOLECULAR DOCKING AND DYNAMIC SIMULATION OF ENTRY INHIBITOR FROM TAMARINDUS INDICA BIOACTIVE COMPOUNDS AGAINST SARS-COV-2 INFECTION VIA VIROINFORMATICS STUDY}, author = {Viol Dhea Kharisma and Arif Nur Muhammad Ansori and Farida Aryani Dian and Wahyu Choirur Rizky and Tim Godefridus Antonius Dings and Rahadian Zainul and Alexander Patera Nugraha}, url = {https://connectjournals.com/03896.2021.21.3323}, issn = {0972-5075}, year = {2021}, date = {2021-07-21}, journal = {Biochem. Cell. Arch.}, volume = {21}, number = {2}, pages = {3323-3327}, abstract = {A massive transmission of SARS-CoV-2, which happens particularly in developing countries has continuously triggered a COVID-19 tsunami and may genuinely increase the mortality number. The significant mortality rate caused by the SARS-CoV-2 pandemic has made it a major world problem. Viral infectivity could arise from the lack of information on the specific antiviral drug. Tamarindus indica has been proven to be a potential antiviral through in vivo research as it decreases viral load in animal viruses. Nevertheless, at the preliminary stage, evidence-based approach like in silico study is necessitated to evaluate its potential as an antiviral in humans. This study screened the content of the active compounds of Tamarindus indica and identified its potential as an antiviral toward SARS-CoV-2 through an entry inhibitor mechanism using bioinformatics tools. Sample retrieval was carried out in the database, then the sample was identified for drug-likeness on the server. Likewise, molecular docking and dynamic simulations were carried out on the identified bioactive compounds. The results showed that all the bioactive compounds possess drug-like molecules and β-sitosterol has the most negative binding affinity. Tamarindus indica is predicted to be an antiviral candidate for SARS-CoV-2 with an entry inhibitor mechanism through a compound, specifically called β-sitosterol.}, keywords = {}, pubstate = {published}, tppubtype = {article} } A massive transmission of SARS-CoV-2, which happens particularly in developing countries has continuously triggered a COVID-19 tsunami and may genuinely increase the mortality number. The significant mortality rate caused by the SARS-CoV-2 pandemic has made it a major world problem. Viral infectivity could arise from the lack of information on the specific antiviral drug. Tamarindus indica has been proven to be a potential antiviral through in vivo research as it decreases viral load in animal viruses. Nevertheless, at the preliminary stage, evidence-based approach like in silico study is necessitated to evaluate its potential as an antiviral in humans. This study screened the content of the active compounds of Tamarindus indica and identified its potential as an antiviral toward SARS-CoV-2 through an entry inhibitor mechanism using bioinformatics tools. Sample retrieval was carried out in the database, then the sample was identified for drug-likeness on the server. Likewise, molecular docking and dynamic simulations were carried out on the identified bioactive compounds. The results showed that all the bioactive compounds possess drug-like molecules and β-sitosterol has the most negative binding affinity. Tamarindus indica is predicted to be an antiviral candidate for SARS-CoV-2 with an entry inhibitor mechanism through a compound, specifically called β-sitosterol. |
Wicaksono, Adhityo; Cristy., Ghea Putri Xenobiology: An expanded semantical review Journal Article Notulae Scientia Biologicae, 13 (10929), pp. 1-14, 2021. @article{Adhityo, title = {Xenobiology: An expanded semantical review }, author = {Adhityo Wicaksono and Ghea Putri Cristy.}, url = {https://www.researchgate.net/publication/352712062_Xenobiology_An_expanded_semantical_review}, doi = {10.15835}, year = {2021}, date = {2021-06-23}, journal = {Notulae Scientia Biologicae}, volume = {13}, number = {10929}, pages = {1-14}, abstract = {The definition of “xenobiology” has gradually shifted from the study of the foreign, estranged life forms potentially existing in outer space to the study where the natural and synthetic life are involved. The natural concept of xenobiology governs the unseen, hypothetical life on the outer space, and the hidden life with completely different biochemistry on Earth. The life on the outer space might possess different way to harvest energy from the one on Earth. The hidden life on Earth, or the “Shadow Biosphere” might rose from completely different way of creation and evolution on Earth, which lead to its complete difference from the known biosphere. The newest concept of xenobiology involves synthetic life, built with unnatural base pair of the nucleic acid, with analogous or xeno nucleic acid (XNA), has a synthetic genome which capable of selfreplicating or enables the synthetic cell to self-replicate, or even possesses a synthetic physiological pathway. By understanding the broad spectrum of xenobiology, in both natural and synthetic concepts, we can expand our view on how life might develop into a completely estranged system, which is different from anthropocentric view of life available around us on Earth. From these perspectives, we might understand how life evolved by evolving it synthetically. }, keywords = {}, pubstate = {published}, tppubtype = {article} } The definition of “xenobiology” has gradually shifted from the study of the foreign, estranged life forms potentially existing in outer space to the study where the natural and synthetic life are involved. The natural concept of xenobiology governs the unseen, hypothetical life on the outer space, and the hidden life with completely different biochemistry on Earth. The life on the outer space might possess different way to harvest energy from the one on Earth. The hidden life on Earth, or the “Shadow Biosphere” might rose from completely different way of creation and evolution on Earth, which lead to its complete difference from the known biosphere. The newest concept of xenobiology involves synthetic life, built with unnatural base pair of the nucleic acid, with analogous or xeno nucleic acid (XNA), has a synthetic genome which capable of selfreplicating or enables the synthetic cell to self-replicate, or even possesses a synthetic physiological pathway. By understanding the broad spectrum of xenobiology, in both natural and synthetic concepts, we can expand our view on how life might develop into a completely estranged system, which is different from anthropocentric view of life available around us on Earth. From these perspectives, we might understand how life evolved by evolving it synthetically. |
Hidvégi, Norbert; Gulyás, Andrea; Teixeira da Silva, Jaime A; Wicaksono, Adhityo; Kiss, Erzsébet Promoter analysis of the SPATULA (FvSPT) and SPIRAL (FvSPR) genes in the woodland diploid strawberry (Fragaria vesca L.) Journal Article Biologia Futura, 2021, ISSN: 2676-8607. @article{wicaksono2021b, title = {Promoter analysis of the SPATULA (FvSPT) and SPIRAL (FvSPR) genes in the woodland diploid strawberry (Fragaria vesca L.)}, author = {Norbert Hidv\'{e}gi and Andrea Guly\'{a}s and Teixeira da Silva, Jaime A and Adhityo Wicaksono and Erzs\'{e}bet Kiss }, url = {https://link.springer.com/article/10.1007%2Fs42977-021-00089-x}, doi = {https://doi.org/10.1007/s42977-021-00089-x}, issn = {2676-8607}, year = {2021}, date = {2021-06-09}, journal = {Biologia Futura}, abstract = {The aim of this study was to identify transcription factor (TF) binding sites and cis-regulatory elements (CREs) on the promoters of FvSPR1-like2 (SPIRAL) and FvSPT (SPATULA) genes in the woodland diploid strawberry (Fragaria vesca L.). We identifed: (1) MYB59, WRKY25 and WRKY8 TFs which play a role in ethylene signaling; (2) ARF family of TFs which play a role in ARF-mediated auxin signaling on the promoter of FvSPR1-like2 gene; (3) ARR family of TFs which play a role in cytokinin signaling; (4) ERF family of TFs which play a role in ethylene signaling on the promoter of FvSPT. This bioinformatic analysis of TFs and CREs may provide a better understanding of the function of genes involved in, and the mechanism underlying, non-climateric ripening during strawberry fruit maturation.}, keywords = {}, pubstate = {published}, tppubtype = {article} } The aim of this study was to identify transcription factor (TF) binding sites and cis-regulatory elements (CREs) on the promoters of FvSPR1-like2 (SPIRAL) and FvSPT (SPATULA) genes in the woodland diploid strawberry (Fragaria vesca L.). We identifed: (1) MYB59, WRKY25 and WRKY8 TFs which play a role in ethylene signaling; (2) ARF family of TFs which play a role in ARF-mediated auxin signaling on the promoter of FvSPR1-like2 gene; (3) ARR family of TFs which play a role in cytokinin signaling; (4) ERF family of TFs which play a role in ethylene signaling on the promoter of FvSPT. This bioinformatic analysis of TFs and CREs may provide a better understanding of the function of genes involved in, and the mechanism underlying, non-climateric ripening during strawberry fruit maturation. |
Wicaksono, Adhityo; Cristy, Ghea Putri; Raihandhany, Reza; Mursidawati, Sofi; Teixeira da Silva, Jaime A; Susatya, Agus Rhizanthes, the Forgotten Relative of Rafflesia in the Rafflesiaceae Journal Article The Botanical Review, 2021. @article{wicaksono2021a, title = {Rhizanthes, the Forgotten Relative of Rafflesia in the Rafflesiaceae}, author = {Adhityo Wicaksono and Ghea Putri Cristy and Reza Raihandhany and Sofi Mursidawati and Teixeira da Silva, Jaime A and Agus Susatya}, url = {https://link.springer.com/article/10.1007%2Fs12229-021-09261-3}, doi = {https://doi.org/10.1007/s12229-021-09261-3}, year = {2021}, date = {2021-05-18}, journal = {The Botanical Review}, abstract = {Rhizanthes is a holoparasitic plant of the Rafflesiaceae, and, just like Rafflesia, its host is Tetrastigma (Vitaceae). Unlike Rafflesia, very little research has been conducted on Rhizanthes other than a few studies focusing on its taxonomy and anatomy, and limited studies on its propagation, despite some ethnomedicinal uses in several regions of Indonesia. Wild populations of Rhizanthes are declining due to deforestation and overharvesting by locals. Artificial pollination and possible seed spread, which are similar to Rafflesia, may be useful for future propagation-based studies, which are generally very difficult and challenging for members of the Rafflesiaceae. This paper emphasizes the cultural and ethnomedicinal importance of Rhizanthes and seeks to define a conservation road-map that incorporates a scientifically-based approach to research while also seeking a four-pronged approach to the conservation of Rhizanthes: 1) conventional and biotechnology-based conservation; 2) germplasm multiplication and preservation; 3) reintroduction into the wild and conservation of wild populations; 4) policy-based protective measures.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Rhizanthes is a holoparasitic plant of the Rafflesiaceae, and, just like Rafflesia, its host is Tetrastigma (Vitaceae). Unlike Rafflesia, very little research has been conducted on Rhizanthes other than a few studies focusing on its taxonomy and anatomy, and limited studies on its propagation, despite some ethnomedicinal uses in several regions of Indonesia. Wild populations of Rhizanthes are declining due to deforestation and overharvesting by locals. Artificial pollination and possible seed spread, which are similar to Rafflesia, may be useful for future propagation-based studies, which are generally very difficult and challenging for members of the Rafflesiaceae. This paper emphasizes the cultural and ethnomedicinal importance of Rhizanthes and seeks to define a conservation road-map that incorporates a scientifically-based approach to research while also seeking a four-pronged approach to the conservation of Rhizanthes: 1) conventional and biotechnology-based conservation; 2) germplasm multiplication and preservation; 3) reintroduction into the wild and conservation of wild populations; 4) policy-based protective measures. |
Fahmi, Muhamad; Kharisma, Viol Dhea; Ansori, Arif Nur Muhammad; Ito, Masahiro Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics Approach Book Chapter Springer, Cham, 2021, ISBN: 978-3-030-63761-3. @inbook{Ansori2021b, title = {Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics Approach}, author = {Muhamad Fahmi and Viol Dhea Kharisma and Arif Nur Muhammad Ansori and Masahiro Ito}, doi = {https://doi.org/10.1007/978-3-030-63761-3_47}, isbn = {978-3-030-63761-3}, year = {2021}, date = {2021-05-11}, publisher = {Springer, Cham}, abstract = {Sudden emergence and a rapid outbreak of SARS-CoV-2 accompanied by a devastating impact on the economy and public health has driven extensive scientific mobilization to study and elucidate the various associated concerns about SARS-CoV-2. Bioinformatics plays a crucial role in addressing and providing solutions to questions about SARS-CoV-2. It helps shorten the duration for the vaccine development process and the discovery of potential clinical interventions through the simulation and information retrieval, and the development of well-ordered information hubs and resources, which are essential to derive data and meaningful findings from the current massive information about SARS-CoV-2. Advanced algorithms in this field also provide approaches that are essential to elucidate the relationship, origin, and evolutionary process of SARS-CoV-2. Here, we report essential bioinformatics entities, such as database and platform development, molecular evolution and phylogenetic analyses, and vaccine designs, that are useful to solve the SARS-CoV-2 conundrum.}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } Sudden emergence and a rapid outbreak of SARS-CoV-2 accompanied by a devastating impact on the economy and public health has driven extensive scientific mobilization to study and elucidate the various associated concerns about SARS-CoV-2. Bioinformatics plays a crucial role in addressing and providing solutions to questions about SARS-CoV-2. It helps shorten the duration for the vaccine development process and the discovery of potential clinical interventions through the simulation and information retrieval, and the development of well-ordered information hubs and resources, which are essential to derive data and meaningful findings from the current massive information about SARS-CoV-2. Advanced algorithms in this field also provide approaches that are essential to elucidate the relationship, origin, and evolutionary process of SARS-CoV-2. Here, we report essential bioinformatics entities, such as database and platform development, molecular evolution and phylogenetic analyses, and vaccine designs, that are useful to solve the SARS-CoV-2 conundrum. |
Wijayanti, A; Hasan, Veryl; Tamam, Muhammad Badrut Range expansion of Oreochromis niloticus (Linnaeys, 1758) (Perciformes, Chichlidae) in Java Sea and first record for Masalembo Island Journal Article IOP Conf. Series: Earth and Environmental Science , 718 , 2021. @article{Wijayanti2021, title = {Range expansion of Oreochromis niloticus (Linnaeys, 1758) (Perciformes, Chichlidae) in Java Sea and first record for Masalembo Island}, author = {A Wijayanti and Veryl Hasan and Muhammad Badrut Tamam}, url = {https://iopscience.iop.org/article/10.1088/1755-1315/718/1/012096/pdf}, doi = {10.1088/1755-1315/718/1/012096}, year = {2021}, date = {2021-05-04}, journal = {IOP Conf. Series: Earth and Environmental Science }, volume = {718}, abstract = {Oreochromis niloticus (Linnaeus, 1758) is native to Africa, with introductions reported from Bawean Island and Kangean Island, Java Sea (Indonesia). In 2019, four specimens of O. niloticus were captured from an estuary (conservation area) on Masalembo Island. This record is among the first of this species from the middle of the Java Sea. A description of morphological characters of the specimens are provided.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Oreochromis niloticus (Linnaeus, 1758) is native to Africa, with introductions reported from Bawean Island and Kangean Island, Java Sea (Indonesia). In 2019, four specimens of O. niloticus were captured from an estuary (conservation area) on Masalembo Island. This record is among the first of this species from the middle of the Java Sea. A description of morphological characters of the specimens are provided. |
Mursidawati, Sofi; Wicaksono, Adhityo; Teixeira da Silva, Jaime A Philippine Journal of Science, 150 (5), pp. 1141-1152, 2021, ISSN: 0031-7683. @article{Adhityo2021b, title = {Tetrastigma leucostaphylum (Dennst.) Alston ex Mabb. Partial wedge sampling, a new, less-invasive solution for stem-borne versus root-borne Rafflesia identification}, author = {Sofi Mursidawati and Adhityo Wicaksono and Teixeira da Silva, Jaime A.}, url = {https://www.researchgate.net/publication/353356570_Tetrastigma_leucostaphylum_Dennst_Alston_ex_Mabb_Partial_wedge_sampling_a_new_less-invasive_solution_for_stem-borne_versus_root-borne_Rafflesia_identification}, issn = {0031-7683}, year = {2021}, date = {2021-05-03}, journal = {Philippine Journal of Science}, volume = {150}, number = {5}, pages = {1141-1152}, abstract = {Tetrastigma (Vitaceae) are a genus of tropical lianas that are hosts for parasitic plants in the family Rafflesiaceae. Since the stem of Tetrastigma is creeping and often devoid of leaves, it is often mistakenly visually identified as a root. Rafflesia flowers at the ground level (i.e. terrestrial flowers) have been documented to grow on Tetrastigma roots, but it is unclear whether those that arise aerially emerge from host root or stem organs. In this study, we present a new, less-destructive means of sampling Tetrastigma leucostaphylum, which is a host of many Rafflesia species. Histological observation of two 250 cm above-ground aerial samples confirmed that both were stems, as shown by distinct anatomical features (compactly arranged vascular bundles with simple phloem bundles) in contrast to roots, which had loosely arranged vascular bundles with ramified phloem bundles. Clearer identification of Tetrastigma vine infected with aerial Rafflesia is needed to confirm whether the parasitic flower grows on a stem or on an erect aerial root to better understand the biology of this enigmatic Rafflesia species that have evaded cultivation and ex situ conservation efforts. This new sampling method may be a useful way to identify the Tetrastigma vine in the future due to its less invasive nature compared to severing the whole vine.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Tetrastigma (Vitaceae) are a genus of tropical lianas that are hosts for parasitic plants in the family Rafflesiaceae. Since the stem of Tetrastigma is creeping and often devoid of leaves, it is often mistakenly visually identified as a root. Rafflesia flowers at the ground level (i.e. terrestrial flowers) have been documented to grow on Tetrastigma roots, but it is unclear whether those that arise aerially emerge from host root or stem organs. In this study, we present a new, less-destructive means of sampling Tetrastigma leucostaphylum, which is a host of many Rafflesia species. Histological observation of two 250 cm above-ground aerial samples confirmed that both were stems, as shown by distinct anatomical features (compactly arranged vascular bundles with simple phloem bundles) in contrast to roots, which had loosely arranged vascular bundles with ramified phloem bundles. Clearer identification of Tetrastigma vine infected with aerial Rafflesia is needed to confirm whether the parasitic flower grows on a stem or on an erect aerial root to better understand the biology of this enigmatic Rafflesia species that have evaded cultivation and ex situ conservation efforts. This new sampling method may be a useful way to identify the Tetrastigma vine in the future due to its less invasive nature compared to severing the whole vine. |
Effendi, Surianto; Mustaqim, Wendy A Alstonia macrophylla (Apocynaceae): A New Record of Naturalized Species in Java, Indonesia. Journal Article Floribunda, 6 (6), pp. 207-212, 2021, ISSN: 2460 - 6944. @article{Effendi2021, title = { Alstonia macrophylla (Apocynaceae): A New Record of Naturalized Species in Java, Indonesia. }, author = {Surianto Effendi and Wendy A. Mustaqim }, url = {https://www.ptti.or.id/journal/index.php/Floribunda/article/view/321}, doi = {10.32556/floribunda.v6i6.2021.321}, issn = {2460 - 6944}, year = {2021}, date = {2021-04-30}, journal = {Floribunda}, volume = {6}, number = {6}, pages = {207-212}, abstract = {Alstonia macrophylla (Apocynaceae), a Malesian widespread species tree, here for the first time is formally reported to be naturally found in Java. The report is based on plants growing in the Ciampea limestone hills, Ciampea sub-district, west of Bogor, West Java. Description, ecology, illustration and a brief discussion regarding the occurrence state of this species as naturalized species in Java are presented. A key to Alstonia species in Java is also given. }, keywords = {}, pubstate = {published}, tppubtype = {article} } Alstonia macrophylla (Apocynaceae), a Malesian widespread species tree, here for the first time is formally reported to be naturally found in Java. The report is based on plants growing in the Ciampea limestone hills, Ciampea sub-district, west of Bogor, West Java. Description, ecology, illustration and a brief discussion regarding the occurrence state of this species as naturalized species in Java are presented. A key to Alstonia species in Java is also given. |
Widyananda, Muhammad Hermawan; Pratama, Setyaki Kevin; Samoedra, Rizky Senna; Sari, Fikriya Novita; Kharisma, Viol Dhea; Ansori, Arif Nur Muhammad; Antonius, Yulanda Journal of Pharmacy & Pharmacognosy Research, 9 (4), pp. 484-496, 2021, ISSN: 0719-4250. @article{Ansori2021, title = {Molecular docking study of sea urchin (Arbacia lixula) peptides as multi-target inhibitor for non-small cell lung cancer (NSCLC) associated proteins}, author = {Muhammad Hermawan Widyananda and Setyaki Kevin Pratama and Rizky Senna Samoedra and Fikriya Novita Sari and Viol Dhea Kharisma and Arif Nur Muhammad Ansori and Yulanda Antonius }, url = {https://jppres.wordpress.com/2021/05/04/molecular-docking-study-of-sea-urchin-arbacia-lixula-peptides-as-multi-target-inhibitor-for-non-small-cell-lung-cancer-nsclc-associated-proteins/}, issn = {0719-4250}, year = {2021}, date = {2021-03-15}, journal = {Journal of Pharmacy & Pharmacognosy Research}, volume = {9}, number = {4}, pages = {484-496}, abstract = {Context: Lung cancer is a type of cancer that causes the most deaths worldwide. The most common type of lung cancer is non-small cell lung cancer (NSCLC). Sea urchin (Arbacia lixula) has high potential as an anti-NSCLC agent. Aims: To analyze the anticancer activity of peptides from A. lixula coelomic fluid in inhibiting the activity of NSCLC-related proteins. Methods: Peptide modeling was performed using the PEP-FOLD3 web server. Proteins that have a crucial role in NSCLC progression were determined using KEGG pathway database. 3D protein structures such as EGFR, PI3K, BRAF V600E, and JAK3 were taken from the RCSB PDB database. Docking was performed using Autodock Vina software. Docking results analysis was carried out using Discovery Studio 2019 software. Results: Some peptides bind to the active sites with low binding affinity. Peptide 10 binds to the active site of the EGFR with a binding affinity of -9 kcal/mol. Peptide 5 binds to the active sites of PI3K and BRAF V600E with binding affinity of -8.2 and -8.1 kcal/mol, respectively. Peptide 11 binds to the active site of JAK3 with a binding affinity of -8.1 kcal/mol. All of these peptides have lower binding affinity than ATP as the native ligand. Besides, these peptides also produce more hydrogen bonds than ATP, so they are predicted to be more stable. Conclusions: Peptides 10, 5, and 11 have high potential as anti-NSCLC agents because they can inhibit the activity of proteins that play an essential role in the growth of NSCLC, namely EGFR, PI3K, BRAF V600E, and JAK3 through the competitive ATP inhibitor mechanism.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Context: Lung cancer is a type of cancer that causes the most deaths worldwide. The most common type of lung cancer is non-small cell lung cancer (NSCLC). Sea urchin (Arbacia lixula) has high potential as an anti-NSCLC agent. Aims: To analyze the anticancer activity of peptides from A. lixula coelomic fluid in inhibiting the activity of NSCLC-related proteins. Methods: Peptide modeling was performed using the PEP-FOLD3 web server. Proteins that have a crucial role in NSCLC progression were determined using KEGG pathway database. 3D protein structures such as EGFR, PI3K, BRAF V600E, and JAK3 were taken from the RCSB PDB database. Docking was performed using Autodock Vina software. Docking results analysis was carried out using Discovery Studio 2019 software. Results: Some peptides bind to the active sites with low binding affinity. Peptide 10 binds to the active site of the EGFR with a binding affinity of -9 kcal/mol. Peptide 5 binds to the active sites of PI3K and BRAF V600E with binding affinity of -8.2 and -8.1 kcal/mol, respectively. Peptide 11 binds to the active site of JAK3 with a binding affinity of -8.1 kcal/mol. All of these peptides have lower binding affinity than ATP as the native ligand. Besides, these peptides also produce more hydrogen bonds than ATP, so they are predicted to be more stable. Conclusions: Peptides 10, 5, and 11 have high potential as anti-NSCLC agents because they can inhibit the activity of proteins that play an essential role in the growth of NSCLC, namely EGFR, PI3K, BRAF V600E, and JAK3 through the competitive ATP inhibitor mechanism. |
Wicaksono, Adhityo; Dobránszki, Judit; da Silva, Jaime Teixeira A The term “caline” in plant developmental biology Journal Article Biologia Futura, 2021. @article{wicaksono2021, title = {The term “caline” in plant developmental biology}, author = {Adhityo Wicaksono and Judit Dobr\'{a}nszki and Jaime A. Teixeira da Silva}, url = {https://link.springer.com/article/10.1007%2Fs42977-021-00076-2}, doi = {https://doi.org/10.1007/s42977-021-00076-2}, year = {2021}, date = {2021-03-01}, journal = {Biologia Futura}, abstract = {In the 1930s, Frits Warmolt Went conducted a number of seminal studies on pea seedlings that had been germinated in the dark and assessed their growth when either the apical parts, cotyledons, or roots were cut of or grafted, to assess whether coplant growth factors assisted auxin in the development of these organs. Went assigned the term “calines” to all auxinassisting substances, specifcally rhizocaline, caulocaline, and phyllocaline in root, shoot (and axillary buds) and leaf development, respectively. Those experiments were based exclusively on growth assays, and no supplementary biochemical or physiological analyses were ever conducted, and additional proof was only provided by Went using pea or tomato. The lack of independent reproducibility by other groups, combined with the fact that the hormonal control of these developmental events in plants is now fairly well-studied event, even at the molecular level, suggests that these growth factors that Went observed 80 years ago either do not exist or are known by some other term in modern plant development. The terms related to “calines” should thus no longer be used in plant developmental biology.}, keywords = {}, pubstate = {published}, tppubtype = {article} } In the 1930s, Frits Warmolt Went conducted a number of seminal studies on pea seedlings that had been germinated in the dark and assessed their growth when either the apical parts, cotyledons, or roots were cut of or grafted, to assess whether coplant growth factors assisted auxin in the development of these organs. Went assigned the term “calines” to all auxinassisting substances, specifcally rhizocaline, caulocaline, and phyllocaline in root, shoot (and axillary buds) and leaf development, respectively. Those experiments were based exclusively on growth assays, and no supplementary biochemical or physiological analyses were ever conducted, and additional proof was only provided by Went using pea or tomato. The lack of independent reproducibility by other groups, combined with the fact that the hormonal control of these developmental events in plants is now fairly well-studied event, even at the molecular level, suggests that these growth factors that Went observed 80 years ago either do not exist or are known by some other term in modern plant development. The terms related to “calines” should thus no longer be used in plant developmental biology. |
Kharisma, Viol Dhea; Widyananda, Muhammad Hermawan; Ansori, Arif Nur Muhammad; Samuel Nege, Aondohemba; Naw, Sin War; Nugraha, Alexander Patera Tea catechin as antiviral agent via apoptosis agonist and triple inhibitor mechanism against HIV-1 infection: A bioinformatics approach Journal Article Journal of Pharmacy & Pharmacognosy Research, 9 (4), pp. 435-445, 2021, ISSN: 0719-4250. @article{Ansori2021a, title = {Tea catechin as antiviral agent via apoptosis agonist and triple inhibitor mechanism against HIV-1 infection: A bioinformatics approach}, author = {Viol Dhea Kharisma and Muhammad Hermawan Widyananda and Arif Nur Muhammad Ansori and Aondohemba Samuel Nege and Sin War Naw and Alexander Patera Nugraha }, url = {https://jppres.com/jppres/in-silico-tea-catechin-as-hiv-antiretroviral-agent/}, issn = {0719-4250}, year = {2021}, date = {2021-02-16}, journal = {Journal of Pharmacy & Pharmacognosy Research}, volume = {9}, number = {4}, pages = {435-445}, abstract = {Context: Human immunodeficiency virus (HIV) antiretrovirals that target the binding of viral enzyme are chosen as the lead solution in the treatment of HIV-1 infection, such as non-catalytic site integrase inhibitor (NCINI), nevirapine, and darunavir. There are natural compounds from specific plants that can be effective in treating HIV-1 infection such as tea catechin. Tea catechin administration causes a decrease in viral load and inhibition of entry mechanisms and an increased effect of apoptosis in infected cells. Aims: To identify the triple inhibitor mechanism in tea catechins against the three HIV-1 enzymes and apoptosis agonists through in silico approach as an innovation in handling HIV-1 infection. Methods: The 3D structure of tea catechin compounds from the database was examined, and then all target compounds were analyzed for druglikeness, molecular docking, pathway prediction, and molecular interactions to determine the potential of tea catechin compounds as antiviral HIV-1 in silico. Results: Tea catechin compounds have the potential to serve as antiviral against HIV-1 through apoptosis agonist and triple inhibitor mechanisms. Apoptosis occurs due to the interaction of tea catechins with pro-apoptotic proteins in cells, and the epigallocatechin gallate (EGCG) compound is a class of tea catechins with the same binding position as control. Conclusions: The binding of the EGCG molecule complex results in low binding energy. Therefore, it allows EGCG acts as a triple inhibitor in HIV-1 infection. }, keywords = {}, pubstate = {published}, tppubtype = {article} } Context: Human immunodeficiency virus (HIV) antiretrovirals that target the binding of viral enzyme are chosen as the lead solution in the treatment of HIV-1 infection, such as non-catalytic site integrase inhibitor (NCINI), nevirapine, and darunavir. There are natural compounds from specific plants that can be effective in treating HIV-1 infection such as tea catechin. Tea catechin administration causes a decrease in viral load and inhibition of entry mechanisms and an increased effect of apoptosis in infected cells. Aims: To identify the triple inhibitor mechanism in tea catechins against the three HIV-1 enzymes and apoptosis agonists through in silico approach as an innovation in handling HIV-1 infection. Methods: The 3D structure of tea catechin compounds from the database was examined, and then all target compounds were analyzed for druglikeness, molecular docking, pathway prediction, and molecular interactions to determine the potential of tea catechin compounds as antiviral HIV-1 in silico. Results: Tea catechin compounds have the potential to serve as antiviral against HIV-1 through apoptosis agonist and triple inhibitor mechanisms. Apoptosis occurs due to the interaction of tea catechins with pro-apoptotic proteins in cells, and the epigallocatechin gallate (EGCG) compound is a class of tea catechins with the same binding position as control. Conclusions: The binding of the EGCG molecule complex results in low binding energy. Therefore, it allows EGCG acts as a triple inhibitor in HIV-1 infection. |
Mustaqim, Merlin Franco; Wendy F A Introduction to Ethnobotany of the Mountain Regions of Southeast Asia Book Chapter pp. 1-26, Springer, Cham, 2021, ISBN: 030-14116-5_208-1. @inbook{Mustaqim2021, title = {Introduction to Ethnobotany of the Mountain Regions of Southeast Asia}, author = {F. Merlin Franco; Wendy A. Mustaqim}, url = {https://link.springer.com/referenceworkentry/10.1007%2F978-3-030-14116-5_208-1#DOI}, doi = {https://doi.org/10.1007/978-3-030-14116-5_208-1}, isbn = {030-14116-5_208-1}, year = {2021}, date = {2021-02-06}, pages = {1-26}, publisher = {Springer, Cham}, abstract = {SE Asia comprises a mainland SE Asia (Enfield and Comrie 2015) and a maritime SE Asia, or archipelagos (Sutherland 2003). Mainland SE Asia is often identified with rice cultivation, while trade is seen as the major economic activity in the maritime countries (Sutherland 2003). The present-day land mass of SE Asia results from the convergence of the Australian, Pacific, and Eurasian plates (Zahirovic et al. 2014), and the biologically and geologically complex Wallacea (Eastern Indonesia) is at the center of this region of confluence (Hall 2011). The definition of SE Asia is a contentious one. Geographical SE Asia includes Northeast India, Andaman and Nicobar Islands of India, Taiwan, and parts of China lying south to the River Yangtze (Enfield and Comrie 2015; Michaud et al. 2016). Popular notion of SE Asia, however, includes the 11 countries of Brunei Darussalam, Cambodia, Indonesia, Laos, Malaysia, Philippines, Thailand, Singapore, Timor Leste, and Vietnam. This popular notion of SE Asia is a legacy of European colonialism in the region and excludes certain ethnic communities of Southwestern China, Taiwan, India, and Bangladesh who are essentially SE Asian by virtue of their language and culture (Michaud et al. 2016; Winzeler 2010). Although the volume originally intended to focus on the plants of ethnobotanical importance for highland communities of geographical SE Asia, it has to be reoriented to focus on popular SE Asia, owing to practical difficulties in compiling the list of all ethnic communities whose culture and language could be considered as SE Asian.}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } SE Asia comprises a mainland SE Asia (Enfield and Comrie 2015) and a maritime SE Asia, or archipelagos (Sutherland 2003). Mainland SE Asia is often identified with rice cultivation, while trade is seen as the major economic activity in the maritime countries (Sutherland 2003). The present-day land mass of SE Asia results from the convergence of the Australian, Pacific, and Eurasian plates (Zahirovic et al. 2014), and the biologically and geologically complex Wallacea (Eastern Indonesia) is at the center of this region of confluence (Hall 2011). The definition of SE Asia is a contentious one. Geographical SE Asia includes Northeast India, Andaman and Nicobar Islands of India, Taiwan, and parts of China lying south to the River Yangtze (Enfield and Comrie 2015; Michaud et al. 2016). Popular notion of SE Asia, however, includes the 11 countries of Brunei Darussalam, Cambodia, Indonesia, Laos, Malaysia, Philippines, Thailand, Singapore, Timor Leste, and Vietnam. This popular notion of SE Asia is a legacy of European colonialism in the region and excludes certain ethnic communities of Southwestern China, Taiwan, India, and Bangladesh who are essentially SE Asian by virtue of their language and culture (Michaud et al. 2016; Winzeler 2010). Although the volume originally intended to focus on the plants of ethnobotanical importance for highland communities of geographical SE Asia, it has to be reoriented to focus on popular SE Asia, owing to practical difficulties in compiling the list of all ethnic communities whose culture and language could be considered as SE Asian. |
Hasan, Veryl; Valen, Fitri S; Islamy, Adharyan R; Widodo, Maheno S; Saptadjaja, Aditya Mirzapahlevi; Islam, Izzul Presence of the vulnerable freshwater goby Sicyopus auxilimentus (Gobiidae, Sicydiinae) on Sangihe Island, Indonesia Journal Article Biodiversitas, 22 (2), pp. 571-579, 2021, ISSN: 2085-4722 . @article{Veryl2021, title = {Presence of the vulnerable freshwater goby Sicyopus auxilimentus (Gobiidae, Sicydiinae) on Sangihe Island, Indonesia}, author = {Veryl Hasan and Fitri S. Valen and R. Adharyan Islamy and Maheno S. Widodo and Aditya Mirzapahlevi Saptadjaja and Izzul Islam}, url = {https://smujo.id/biodiv/article/view/7121}, doi = {10.13057/biodiv/d220208}, issn = {2085-4722 }, year = {2021}, date = {2021-02-02}, journal = {Biodiversitas}, volume = {22}, number = {2}, pages = { 571-579}, abstract = {A single specimen of freshwater goby Sicyopus auxilimentus was photographed and collected using fish traps between 8 and 15 September 2019 in the Laine waterfall, Sangihe island district, North Sulawesi Province, Indonesia. S. auxilimentus is amphidromous that live in both freshwater and marine environments. This species is currently listed as Vulnerable (VU) within the IUCN Red List Status. The specimen was identified as male S. auxilimentus based on the coloration of the preserved specimen: background yellowish; scale edges brown; posterior flanks and caudal peduncle orange; first dorsal fin black, second dorsal fin dusky black; pectoral fin slightly brown; ventral fin slightly dusky; anal fin blackish; caudal fin dusky brown. Specific morphological features were as follows: the base of the first dorsal fin was not connected to the second dorsal fin base; distance between the base of first and second dorsal fin was generally less than half of eye diameter; ventral fin rays were fused to belly only between fifth rays; posterior margin of caudal fins rays was rounded; scales were all ctenoid; scales appeared on the caudal peduncle, and between anal and second dorsal fins; anterior to which, scales became widely spaced and did not imbricate. Meristic characters were as follows: first dorsal fin rays VI; second dorsal fin rays I+9; ventral fin rays I+5; pectoral-fin rays 14; anal-fin rays I+9; caudal-fin rays 13; scales in lateral series 13; scales in zigzag series 7; scales in transverse series backward 7; scales in transerves series forward 4. This finding is considered the first record in Sulawesi and the fifth from Indonesian waters after findings in Halmahera, Java, Bali and Lombok. This record enhances the understanding of the distribution of S. auxilimentus in Indonesian waters. Monitoring is needed to assess the possibility of Sangihe Island being a growth ground, spawning ground, and/or on the migration route of S. auxilimentus. In the Laine waterfall, Sangihe island, freshwater conditions were as follows: salinity 3.5 psu, temperature 23-25°C, and dissolved oxygen 7.7-9.2 mg/l, which were ideal habitat for S. auxilimentus. S. auxilimentus from Sangihe Island, had 0.000 genetic distance than from S. auxilimentus from Bali, while the next closest genetic distance was S. zosterophorus at genetic distance of 0.090. In addition to onsite conservation, domestication programs are needed to increase commercial availability without depending on natural catches.}, keywords = {}, pubstate = {published}, tppubtype = {article} } A single specimen of freshwater goby Sicyopus auxilimentus was photographed and collected using fish traps between 8 and 15 September 2019 in the Laine waterfall, Sangihe island district, North Sulawesi Province, Indonesia. S. auxilimentus is amphidromous that live in both freshwater and marine environments. This species is currently listed as Vulnerable (VU) within the IUCN Red List Status. The specimen was identified as male S. auxilimentus based on the coloration of the preserved specimen: background yellowish; scale edges brown; posterior flanks and caudal peduncle orange; first dorsal fin black, second dorsal fin dusky black; pectoral fin slightly brown; ventral fin slightly dusky; anal fin blackish; caudal fin dusky brown. Specific morphological features were as follows: the base of the first dorsal fin was not connected to the second dorsal fin base; distance between the base of first and second dorsal fin was generally less than half of eye diameter; ventral fin rays were fused to belly only between fifth rays; posterior margin of caudal fins rays was rounded; scales were all ctenoid; scales appeared on the caudal peduncle, and between anal and second dorsal fins; anterior to which, scales became widely spaced and did not imbricate. Meristic characters were as follows: first dorsal fin rays VI; second dorsal fin rays I+9; ventral fin rays I+5; pectoral-fin rays 14; anal-fin rays I+9; caudal-fin rays 13; scales in lateral series 13; scales in zigzag series 7; scales in transverse series backward 7; scales in transerves series forward 4. This finding is considered the first record in Sulawesi and the fifth from Indonesian waters after findings in Halmahera, Java, Bali and Lombok. This record enhances the understanding of the distribution of S. auxilimentus in Indonesian waters. Monitoring is needed to assess the possibility of Sangihe Island being a growth ground, spawning ground, and/or on the migration route of S. auxilimentus. In the Laine waterfall, Sangihe island, freshwater conditions were as follows: salinity 3.5 psu, temperature 23-25°C, and dissolved oxygen 7.7-9.2 mg/l, which were ideal habitat for S. auxilimentus. S. auxilimentus from Sangihe Island, had 0.000 genetic distance than from S. auxilimentus from Bali, while the next closest genetic distance was S. zosterophorus at genetic distance of 0.090. In addition to onsite conservation, domestication programs are needed to increase commercial availability without depending on natural catches. |
Probojati, Rasyadan Taufiq; Listyorini, Dwi; Sulisetijono, Sulisetijono; Wahyudi, Didik Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes Journal Article Bulletin of the National Research Centre, 45 (33), pp. 1-13, 2021, ISSN: 2522-8307. @article{Probojati2021, title = {Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes}, author = {Rasyadan Taufiq Probojati and Dwi Listyorini and Sulisetijono Sulisetijono and Didik Wahyudi}, url = {https://bnrc.springeropen.com/articles/10.1186/s42269-021-00492-3#citeas}, doi = {https://doi.org/10.1186/s42269-021-00492-3}, issn = {2522-8307}, year = {2021}, date = {2021-02-01}, journal = {Bulletin of the National Research Centre}, volume = {45}, number = {33}, pages = {1-13}, abstract = {Background: The identifcation of banana cultivars genome is needed to provide a valid identity from the accession of bananas which are used as basic data in the management of in situ and ex situ banana conservation as well as for further breeding of banana cultivars. Results: The size of PCR-amplifed matK ranged from 844 to 860 bp and showed a high variability. The haplotype diversity was 0.9048 with nine haplotypes. Haplotype distribution map revealed the lineage patterns of banana cultivars from Java. Reconstruction of genetic relationships using the maximum likelihood, maximum parsimony and Bayesian inference algorithms produces tree topologies and classifcations that are grouped according to their genomic groups, into three main clades, i.e., AA/AAA, AAB and ABB. Based on the previously derived age constraints and fossil data, we estimate (Musaceae) that genetic divergence times of all samples occurred during the Eocene (95% HPD: 51.9 Mya), Musa acuminata group (AA, AAA, AAB) with Musa balbisiana group (BB and ABB) occurred during the Oligocene (95% HPD: 26 Mya), and the separation on each banana cultivars occurred during the Middle Miocene to Pliocene (95% HPD: 16.5\textendash2.5 Mya). Conclusions: From this study, we conclude that all studied cultivars are closely related according to its genomic groups with high variation. Genetic variation among those cultivars creates nine haplotypes. The development of variety which leads to the formation of diferent banana cultivars had suggested to be occurred long ago along with human migration and domestication. Keywords: Banana phylogeny, Banana divergence times, Banana genetic diversity, MatK gene, Banana in Java Island}, keywords = {}, pubstate = {published}, tppubtype = {article} } Background: The identifcation of banana cultivars genome is needed to provide a valid identity from the accession of bananas which are used as basic data in the management of in situ and ex situ banana conservation as well as for further breeding of banana cultivars. Results: The size of PCR-amplifed matK ranged from 844 to 860 bp and showed a high variability. The haplotype diversity was 0.9048 with nine haplotypes. Haplotype distribution map revealed the lineage patterns of banana cultivars from Java. Reconstruction of genetic relationships using the maximum likelihood, maximum parsimony and Bayesian inference algorithms produces tree topologies and classifcations that are grouped according to their genomic groups, into three main clades, i.e., AA/AAA, AAB and ABB. Based on the previously derived age constraints and fossil data, we estimate (Musaceae) that genetic divergence times of all samples occurred during the Eocene (95% HPD: 51.9 Mya), Musa acuminata group (AA, AAA, AAB) with Musa balbisiana group (BB and ABB) occurred during the Oligocene (95% HPD: 26 Mya), and the separation on each banana cultivars occurred during the Middle Miocene to Pliocene (95% HPD: 16.5–2.5 Mya). Conclusions: From this study, we conclude that all studied cultivars are closely related according to its genomic groups with high variation. Genetic variation among those cultivars creates nine haplotypes. The development of variety which leads to the formation of diferent banana cultivars had suggested to be occurred long ago along with human migration and domestication. Keywords: Banana phylogeny, Banana divergence times, Banana genetic diversity, MatK gene, Banana in Java Island |
Kharisma, Viol Dhea; Kharisma, Sasando Dhohan; Ansori, Arif Nur Muhammad; Kurniawan, Hanny Priskila; Witaningrum, Adiana Mutamsari; Fadholly, Amaq; Tacharina, Martia Rani Research Journal of Pharmacy and Technology, 14 (1), pp. 455-460, 2021, ISSN: 0974-360X. @article{Viol2021a, title = {Antiretroviral Effect Simulation from Black Tea (Camellia sinensis) via Dual Inhibitors Mechanism in HIV-1 and its Social Perspective in Indonesia}, author = {Viol Dhea Kharisma and Sasando Dhohan Kharisma and Arif Nur Muhammad Ansori and Hanny Priskila Kurniawan and Adiana Mutamsari Witaningrum and Amaq Fadholly and Martia Rani Tacharina}, url = {https://rjptonline.org/AbstractView.aspx?PID=2021-14-1-83}, doi = {10.5958/0974-360X.2021.00083.4}, issn = {0974-360X}, year = {2021}, date = {2021-02-01}, journal = { Research Journal of Pharmacy and Technology}, volume = {14}, number = {1}, pages = {455-460}, abstract = {This study aims to investigate the general social perspective related to black tea (Camellia sinensis) as a traditional treatment in Indonesia, the potency of bioactive compounds in black tea as a dual inhibitor of the replication of HIV-1 as it inhibits the chemical interactions between ligands and target protein domain. The samples is prepared from specific databases that is about HIV-1 target protein, black tea chemical compounds, and HIV-1 drug compounds as positive control. After that the virtual screening, protein-ligand interaction, and molecular visualization tests were performed. Thirteen black tea compounds obtained from the database and 2 control compounds consisting of neverapine and darunavir. In addition, the 3D structure of the target protein from HIV-1 consisting of reverse transcriptase (RT) (ID 3LP1) and protease (PR) (ID 4HLA) was obtained from a protein database. Interestingly, the social perspective regarding HIV-1 treatment is predicted to be more likely to choose traditional medicine compared to the use of antiretroviral (ARV) drugs. Traditional medicine with black tea may be very popular among many people. In conclusion, almost all chemical compounds contained in black tea can inhibit the HIV-1 replication. Furthermore, there are two compounds that play an important role in the process because it is predicted to inhibit the biological activity of PR and RT in HIV-1, (-)-epicatechin-gallate and epigallocatechin-gallate called dual inhibitors.}, keywords = {}, pubstate = {published}, tppubtype = {article} } This study aims to investigate the general social perspective related to black tea (Camellia sinensis) as a traditional treatment in Indonesia, the potency of bioactive compounds in black tea as a dual inhibitor of the replication of HIV-1 as it inhibits the chemical interactions between ligands and target protein domain. The samples is prepared from specific databases that is about HIV-1 target protein, black tea chemical compounds, and HIV-1 drug compounds as positive control. After that the virtual screening, protein-ligand interaction, and molecular visualization tests were performed. Thirteen black tea compounds obtained from the database and 2 control compounds consisting of neverapine and darunavir. In addition, the 3D structure of the target protein from HIV-1 consisting of reverse transcriptase (RT) (ID 3LP1) and protease (PR) (ID 4HLA) was obtained from a protein database. Interestingly, the social perspective regarding HIV-1 treatment is predicted to be more likely to choose traditional medicine compared to the use of antiretroviral (ARV) drugs. Traditional medicine with black tea may be very popular among many people. In conclusion, almost all chemical compounds contained in black tea can inhibit the HIV-1 replication. Furthermore, there are two compounds that play an important role in the process because it is predicted to inhibit the biological activity of PR and RT in HIV-1, (-)-epicatechin-gallate and epigallocatechin-gallate called dual inhibitors. |
Samitra, Dian; Rozi, Zico Fakhrur Amphibian Diversity in the Waterfall of Lubuklinggau City, South Sumatra Journal Article Biota, 7 (1), pp. 10-16, 2021, ISSN: 2460-7746. @article{Samitra2021, title = {Amphibian Diversity in the Waterfall of Lubuklinggau City, South Sumatra}, author = {Dian Samitra and Zico Fakhrur Rozi}, url = {http://jurnal.radenfatah.ac.id/index.php/biota/article/view/6412}, doi = {https://doi.org/10.19109/Biota.v7i1.6412}, issn = {2460-7746}, year = {2021}, date = {2021-01-23}, journal = {Biota}, volume = {7}, number = {1}, pages = {10-16}, abstract = {Temam and Sando Waterfalls are suitable habitats for amphibian life, the presence of tourist visits and additional facilities can cause disturbance to amphibians. However, amphibian data at the two locations have not been recorded. This study aims to determine diversity amphibians in the Temam and Sando Waterfall, Lubuklinggau City. The study was conducted from June to July 2020. The collection data used Visual Encounter Survey (VES) techniques and time search. The data were analyzed using relative abundance, and indexes of diversity, evenness, similarity, and dominance. 11 species of amphibians belonging to 5 families were found during the study. Odorrana hosii was found mostly during the study. Amphibian diversity in the waterfall of Temam and Sando Waterfall was categorized as low.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Temam and Sando Waterfalls are suitable habitats for amphibian life, the presence of tourist visits and additional facilities can cause disturbance to amphibians. However, amphibian data at the two locations have not been recorded. This study aims to determine diversity amphibians in the Temam and Sando Waterfall, Lubuklinggau City. The study was conducted from June to July 2020. The collection data used Visual Encounter Survey (VES) techniques and time search. The data were analyzed using relative abundance, and indexes of diversity, evenness, similarity, and dominance. 11 species of amphibians belonging to 5 families were found during the study. Odorrana hosii was found mostly during the study. Amphibian diversity in the waterfall of Temam and Sando Waterfall was categorized as low. |
Kharisma, Viol Dhea; , Rasyadan Taufiq Probojati ; Murtadlo, Ahmad Affan Ali; Muhammad Ansori, Arif Nur; Antonius, Yulanda; Tamam, Muhammad Badrut Revealing Potency of Bioactive Compounds as Inhibitor of Dengue Virus (DENV) NS2B/NS3 Protease from Sweet Potato (Ipomoea batatas L.) Leaves Journal Article Indian Journal of Forensic Medicine and Toxicology, 15 (1), pp. 1627-1632, 2021, ISSN: 0973-9130. @article{Viol2021, title = {Revealing Potency of Bioactive Compounds as Inhibitor of Dengue Virus (DENV) NS2B/NS3 Protease from Sweet Potato (Ipomoea batatas L.) Leaves}, author = {Viol Dhea Kharisma and , Rasyadan Taufiq Probojati and Ahmad Affan Ali Murtadlo and Arif Nur Muhammad Ansori and Yulanda Antonius and Muhammad Badrut Tamam }, url = {https://www.researchgate.net/profile/Viol_Kharisma/publication/348447925_Revealing_Potency_of_Bioactive_Compounds_as_Inhibitor_of_Dengue_Virus_DENV_NS2BNS3_Protease_from_Sweet_Potato_Ipomoea_batatas_L_Leaves/links/6000156ba6fdccdcb8518562/Revealing-Potency-of-Bioactive-Compounds-as-Inhibitor-of-Dengue-Virus-DENV-NS2B-NS3-Protease-from-Sweet-Potato-Ipomoea-batatas-L-Leaves.pdf}, doi = {10.37506/ijfmt.v15i1.13644}, issn = {0973-9130}, year = {2021}, date = {2021-01-14}, journal = {Indian Journal of Forensic Medicine and Toxicology}, volume = {15}, number = {1}, pages = {1627-1632}, abstract = {This study aims to identify the potency of bioactive compounds of sweet potato leaf as inhibitory agent to dengue virus (DENV) NS2B/NS3 protease by using computational study. The 3D structure of NS2B/NS3 protease was collected from PDB and the 2D structure of several bioactive compounds of sweet potato leaf were obtained from PubChem. The visualization and data analysis were performed by using the PyMol software. According to the in silico analysis, result demonstrated that dehydroabietinol had the lowest free energy binding. However, based on the protein-ligand analysis, all the compounds showed the hydrogen bond and hydrophobic interaction. All the compounds with hydrogen bond could not be interacted with catalytic domain, but hydrophobic interaction could be interacted to the target domain via Ser135 by δ-Selinene and His51 by α-Caryophyllene. In summary, we conclude that δ-Selinene and α-Caryophyllene might have potencies as a therapeutically drug for dengue.}, keywords = {}, pubstate = {published}, tppubtype = {article} } This study aims to identify the potency of bioactive compounds of sweet potato leaf as inhibitory agent to dengue virus (DENV) NS2B/NS3 protease by using computational study. The 3D structure of NS2B/NS3 protease was collected from PDB and the 2D structure of several bioactive compounds of sweet potato leaf were obtained from PubChem. The visualization and data analysis were performed by using the PyMol software. According to the in silico analysis, result demonstrated that dehydroabietinol had the lowest free energy binding. However, based on the protein-ligand analysis, all the compounds showed the hydrogen bond and hydrophobic interaction. All the compounds with hydrogen bond could not be interacted with catalytic domain, but hydrophobic interaction could be interacted to the target domain via Ser135 by δ-Selinene and His51 by α-Caryophyllene. In summary, we conclude that δ-Selinene and α-Caryophyllene might have potencies as a therapeutically drug for dengue. |
Santoso, Heri Chloranthus elatior Link Chloranthaceae Book Chapter F., Franco (Ed.): pp. 1-5, Springer, Cham, 2021, ISBN: 978-3-030-14116-5. @inbook{Santoso2021, title = {Chloranthus elatior Link Chloranthaceae}, author = {Heri Santoso }, editor = {Franco F.}, url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_239-1}, doi = {https://doi.org/10.1007/978-3-030-14116-5_239-1}, isbn = {978-3-030-14116-5}, year = {2021}, date = {2021-01-13}, pages = {1-5}, publisher = {Springer, Cham}, abstract = {Chloranthus erectus (Buch.-Ham.) Sweet ex Wall.; Chloranthus officinalis Blume; Chloranthus salicifolius C.Presl.; Chloranthus sumatranus Miq.; Cryphaea erecta Buch.-Ham. (POWO 2020)}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } Chloranthus erectus (Buch.-Ham.) Sweet ex Wall.; Chloranthus officinalis Blume; Chloranthus salicifolius C.Presl.; Chloranthus sumatranus Miq.; Cryphaea erecta Buch.-Ham. (POWO 2020) |
Serdiati, Novalina; LigaInsani, ; Safir, Muhammad; Rukka, Andi Heryanti; Mangitung, Septina F; Tamam, Fitri Sil Valen Muhammad Badrut; Hasan, Veryl Eco. Env. & Cons, 27 (1), pp. 168-171, 2021. @article{Serdiati2021, title = {Range expansion of the Invasive Nile Tilapia Oreochromis niloticus (Perciformes: Cichlidae) in Sulawesi Sea and first record for Sangihe Island, Tahuna, North Sulawesi, Indonesia}, author = {Novalina Serdiati and LigaInsani and Muhammad Safir and Andi Heryanti Rukka and Septina F. Mangitung and Fitri Sil Valen Muhammad Badrut Tamam and Veryl Hasan}, url = {http://www.envirobiotechjournals.com/article_abstract.php?aid=11218&iid=327&jid=3}, year = {2021}, date = {2021-01-01}, journal = {Eco. Env. & Cons}, volume = {27}, number = {1}, pages = {168-171}, abstract = {Oreochromis niloticus (Linnaeus, 1758) is native species to North Africa, that has been introduced to many areas worldwide, including Indonesia. On 10-24 January 2020 specimens of O. niloticus were captured from Laine Waterfall in Sangihe Island, Indonesia, as a new record for this island. Introduced non-native fish would be able to have negative impacts on the aquatic species communities through competition food and other resources, so the existence of the O. niloticus is a risk. The characteristics of O. niloticus specimens were as follows dorsal spin rays 15, dorsal soft rays 11, pelvic spin rays 1, pelvic soft rays 5, pectoral fin rays 10, anal spin rays 8, anal soft rays 10. The specific morphological characters of a specimen are provided.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Oreochromis niloticus (Linnaeus, 1758) is native species to North Africa, that has been introduced to many areas worldwide, including Indonesia. On 10-24 January 2020 specimens of O. niloticus were captured from Laine Waterfall in Sangihe Island, Indonesia, as a new record for this island. Introduced non-native fish would be able to have negative impacts on the aquatic species communities through competition food and other resources, so the existence of the O. niloticus is a risk. The characteristics of O. niloticus specimens were as follows dorsal spin rays 15, dorsal soft rays 11, pelvic spin rays 1, pelvic soft rays 5, pectoral fin rays 10, anal spin rays 8, anal soft rays 10. The specific morphological characters of a specimen are provided. |
2020 |
Amboupe, Dewi S; Mustaqim, Wendy A Passiflora foetida L. Passifloraceae Book Chapter pp. 1-10, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020lb, title = {Passiflora foetida L. Passifloraceae}, author = {Dewi S. Amboupe and Wendy A. Mustaqim}, url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_182-1}, doi = {https://doi.org/10.1007/978-3-030-14116-5_182-1}, isbn = {978-3-030-14116-5}, year = {2020}, date = {2020-12-29}, pages = {1-10}, publisher = {Springer, Cham}, abstract = {Dysosmia foetida M.Roem.; Dysosmia hircina Sweet ex M. Roem.; Dysosmia polyadena M.Roem.; Granadilla foetida Gaertn.f.; Passiflora foetida var. gossypifolia f. longifolia Kuntze; Passiflora foetida var. hirsuta f. longifolia Kuntze; Passiflora foetida var. variegata G.F.W.Mey.; Passiflora hibiscifolia var. velutina Fenzl.; Passiflora polyaden Vell.; Passiflora vesicaria L.; Tripsilina fetida Raf.}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } Dysosmia foetida M.Roem.; Dysosmia hircina Sweet ex M. Roem.; Dysosmia polyadena M.Roem.; Granadilla foetida Gaertn.f.; Passiflora foetida var. gossypifolia f. longifolia Kuntze; Passiflora foetida var. hirsuta f. longifolia Kuntze; Passiflora foetida var. variegata G.F.W.Mey.; Passiflora hibiscifolia var. velutina Fenzl.; Passiflora polyaden Vell.; Passiflora vesicaria L.; Tripsilina fetida Raf. |
Mustaqim, Wendy A; Low, Yee Wen; Heatubun, Charlie D A new species of Syzygium (Myrtaceae) from the Bird’s Head Peninsula, western New Guinea Journal Article Telopea Journal of Plant Systematics, 23 , pp. 221–225, 2020, ISSN: 2200-4025. @article{Mustaqim2020mb, title = {A new species of Syzygium (Myrtaceae) from the Bird’s Head Peninsula, western New Guinea}, author = {Wendy A. Mustaqim and Yee Wen Low and Charlie D. Heatubun }, doi = {dx.doi.org/10.7751/telopea14780}, issn = {2200-4025}, year = {2020}, date = {2020-12-29}, journal = {Telopea Journal of Plant Systematics}, volume = {23}, pages = {221\textendash225}, abstract = {Syzygium oransbariense Mustaqim, Y.W.Low & Heatubun (Myrtaceae) is here formally described. This species is found in the lowlands on the eastern flank of the Arfak Mountains, Bird’s Head Peninsula, western New Guinea. The species is similar to Syzygium longipes (Diels) Merr. & L.M.Perry but differs based on a set of diagnostic morphological characters. Species description, distribution, a preliminary conservation status assessment, and notes on the new species are presented here.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Syzygium oransbariense Mustaqim, Y.W.Low & Heatubun (Myrtaceae) is here formally described. This species is found in the lowlands on the eastern flank of the Arfak Mountains, Bird’s Head Peninsula, western New Guinea. The species is similar to Syzygium longipes (Diels) Merr. & L.M.Perry but differs based on a set of diagnostic morphological characters. Species description, distribution, a preliminary conservation status assessment, and notes on the new species are presented here. |
Yus, Reza Raihandhany; Nugraha, Dicky; Sidik, Rasyid Inventarisasi Keanekaragaman Spesies Tumbuhan Bawah di Kawasan Agrowisata Pangjugjugan, Desa Cilembu, Sumedang Journal Article BIOTIKA Jurnal Ilmiah Biologi, 18 (2), pp. 9-24, 2020, ISSN: 2621-4180. @article{Reza, title = {Inventarisasi Keanekaragaman Spesies Tumbuhan Bawah di Kawasan Agrowisata Pangjugjugan, Desa Cilembu, Sumedang}, author = {Reza Raihandhany Yus and Dicky Nugraha and Rasyid Sidik }, url = {http://jurnal.unpad.ac.id/biotika,}, doi = {https://doi.org/10.24198/biotika.v18i2.28459}, issn = {2621-4180}, year = {2020}, date = {2020-12-23}, journal = {BIOTIKA Jurnal Ilmiah Biologi}, volume = {18}, number = {2}, pages = {9-24}, abstract = {Agrowisata merupakan aktivitas wisata yang melibatkan kompleksitas ekosistem agro yang didalamnya tidak terlepas dari keberadaan tumbuhan bawah yang identik dengan gulma maupun tumbuhan hias. Tujuan dari penelitian ini adalah untuk menginventarisasi spesies tumbuhan bawah pada lahan perkebunan ubi cilembu (Ipomoea batatas L.) dan taman pinus (Pinus merkusii Jungh. & de Vriese) di Kawasan Agrowisata Pangjugjugan, Desa Cilembu, Kabupaten Sumedang. Penelitian dilakukan pada bulan Januari 2020 dengan menggunakan metode survei langsung. Tumbuhan bawah yang dijumpai di lahan perkebunan ubi cilembu dan taman pinus dicatat nama spesies, nama lokal, dan familinya pada lembar pencatatan lalu diidentifikasi. Berdasarkan hasil penelitian, sebanyak 79 spesies yang tersebar pada 30 famili. Asteraceae dan Poaceae merupakan famili tumbuhan dengan jumlah spesies terbanyak yang ditemukan di Kawasan Agrowisata Pangjugjugan, yaitu berturut-turut sebanyak 16 spesies dan 10 spesies.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Agrowisata merupakan aktivitas wisata yang melibatkan kompleksitas ekosistem agro yang didalamnya tidak terlepas dari keberadaan tumbuhan bawah yang identik dengan gulma maupun tumbuhan hias. Tujuan dari penelitian ini adalah untuk menginventarisasi spesies tumbuhan bawah pada lahan perkebunan ubi cilembu (Ipomoea batatas L.) dan taman pinus (Pinus merkusii Jungh. & de Vriese) di Kawasan Agrowisata Pangjugjugan, Desa Cilembu, Kabupaten Sumedang. Penelitian dilakukan pada bulan Januari 2020 dengan menggunakan metode survei langsung. Tumbuhan bawah yang dijumpai di lahan perkebunan ubi cilembu dan taman pinus dicatat nama spesies, nama lokal, dan familinya pada lembar pencatatan lalu diidentifikasi. Berdasarkan hasil penelitian, sebanyak 79 spesies yang tersebar pada 30 famili. Asteraceae dan Poaceae merupakan famili tumbuhan dengan jumlah spesies terbanyak yang ditemukan di Kawasan Agrowisata Pangjugjugan, yaitu berturut-turut sebanyak 16 spesies dan 10 spesies. |
Santoso, Heri Platostoma palustre (Blume) A.J.Paton Lamiaceae Book Chapter F., Franco (Ed.): pp. 1-5, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Santoso2020a, title = {Platostoma palustre (Blume) A.J.Paton Lamiaceae}, author = {Heri Santoso }, editor = {Franco F. }, url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_237-1}, doi = {https://doi.org/10.1007/978-3-030-14116-5_237-1}, isbn = {978-3-030-14116-5}, year = {2020}, date = {2020-12-11}, pages = {1-5}, publisher = {Springer, Cham}, abstract = {Geniosporum parviflorum Benth.; Mesona chinensis Benth.; Mesona elegans Hayata; Mesona palustris Blume; Mesona parviflora (Benth.) Briq.; Mesona philippinensis Merr.; Mesona procumbens Hemsl.; Mesona wallichiana Benth.; Platostoma chinense (Benth.) A.J.Paton (POWO 2020)}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } Geniosporum parviflorum Benth.; Mesona chinensis Benth.; Mesona elegans Hayata; Mesona palustris Blume; Mesona parviflora (Benth.) Briq.; Mesona philippinensis Merr.; Mesona procumbens Hemsl.; Mesona wallichiana Benth.; Platostoma chinense (Benth.) A.J.Paton (POWO 2020) |
Tambunan, Meidoraeka Rigine; Yus, Reza Raihandhany Jenis-Jenis Tumbuhan Parasit dan Persebarannya di Institut Teknologi Bandung (ITB) Kampus Ganesha Journal Article Jurnal Sumberdaya HAYATI, 6 (2), pp. 47-55, 2020, ISSN: 2477-037X. @article{Tambunan2020, title = {Jenis-Jenis Tumbuhan Parasit dan Persebarannya di Institut Teknologi Bandung (ITB) Kampus Ganesha}, author = {Meidoraeka Rigine Tambunan and Reza Raihandhany Yus }, url = {https://journal.ipb.ac.id/index.php/sumberdayahayati/article/view/30336}, doi = {https://doi.org/10.29244/jsdh.6.2.47-55}, issn = {2477-037X}, year = {2020}, date = {2020-11-30}, journal = {Jurnal Sumberdaya HAYATI}, volume = {6}, number = {2}, pages = {47-55}, abstract = {Parasitic plants are a group of plants that live and have a broad ecological distribution which in general attack trees, shrubs or herbs to be used as a host. Some parasitic plants attacked some plants in Institut Teknologi Bandung (ITB) Ganesha Campus, Bandung. Exploration and collection of these parasitic plants in this area are conducted. Three parasitic plants species, such as Cuscuta australis, Scurrula parasitica, and Dendrophthoe pentandra are recorded and they attack 7 other plants species in ITB Ganesha. S. parasitica is reported as the highest population species to parasiting 5 plants species, while C. australis only parasiting 3 plants species and D. pendantra is parasiting 4 plants.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Parasitic plants are a group of plants that live and have a broad ecological distribution which in general attack trees, shrubs or herbs to be used as a host. Some parasitic plants attacked some plants in Institut Teknologi Bandung (ITB) Ganesha Campus, Bandung. Exploration and collection of these parasitic plants in this area are conducted. Three parasitic plants species, such as Cuscuta australis, Scurrula parasitica, and Dendrophthoe pentandra are recorded and they attack 7 other plants species in ITB Ganesha. S. parasitica is reported as the highest population species to parasiting 5 plants species, while C. australis only parasiting 3 plants species and D. pendantra is parasiting 4 plants. |
Wicaksono, Adhityo; Mursidawati, Sofi; Molina, Jeanmaire A Plant within a Plant: Insights on the Development of the Rafflesia Endophyte within its Host Journal Article The Botanical Review , 2020, ISSN: 0006-8101. @article{Wicaksono2020d, title = {A Plant within a Plant: Insights on the Development of the Rafflesia Endophyte within its Host}, author = {Adhityo Wicaksono and Sofi Mursidawati and Jeanmaire Molina}, url = {https://link.springer.com/article/10.1007/s12229-020-09236-w#citeas}, doi = {https://doi.org/10.1007/s12229-020-09236-w}, issn = {0006-8101}, year = {2020}, date = {2020-11-24}, journal = {The Botanical Review }, abstract = {Rafflesia produces the largest single flowers in the world, at the expense of its host vine, Tetrastigma, yet it begins as an inconspicuous endophyte. It is unknown how the Rafflesia seed gets into the host and germinates. Multiple locals claim to have successfully grown the holoparasitic flower from seeds resulting in blooms. Using available morpho-histological studies, combined with descriptions from local Rafflesia seed growers, as well as unpublished details of our own work, we filled in the missing details of Rafflesia’s life cycle from seed germination to endophyte inside the host before it transitions to its flowering stage. Post-germination, the Rafflesia endophyte forms a clonal network of vegetative meristematic cells, separated by the dividing host tissue, each meristematic cell cluster eventually developing into the primordial floral bud or protocorm. We propose future work involving mass spectrometry imaging to characterize the metabolites that allow communication between distant endophytic clusters and floral bud induction without destroying the histology of the sample.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Rafflesia produces the largest single flowers in the world, at the expense of its host vine, Tetrastigma, yet it begins as an inconspicuous endophyte. It is unknown how the Rafflesia seed gets into the host and germinates. Multiple locals claim to have successfully grown the holoparasitic flower from seeds resulting in blooms. Using available morpho-histological studies, combined with descriptions from local Rafflesia seed growers, as well as unpublished details of our own work, we filled in the missing details of Rafflesia’s life cycle from seed germination to endophyte inside the host before it transitions to its flowering stage. Post-germination, the Rafflesia endophyte forms a clonal network of vegetative meristematic cells, separated by the dividing host tissue, each meristematic cell cluster eventually developing into the primordial floral bud or protocorm. We propose future work involving mass spectrometry imaging to characterize the metabolites that allow communication between distant endophytic clusters and floral bud induction without destroying the histology of the sample. |
Mustaqim, Wendy Achmmad Melastoma malabathricum L. Melastomataceae Book Chapter F., Franco (Ed.): pp. 1-26, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020l, title = {Melastoma malabathricum L. Melastomataceae}, author = {Wendy Achmmad Mustaqim }, editor = {Franco F.}, url = {https://link.springer.com/referenceworkentry/10.1007%2F978-3-030-14116-5_166-1#DOI}, doi = {https://doi.org/10.1007/978-3-030-14116-5_166-1}, isbn = {978-3-030-14116-5}, year = {2020}, date = {2020-11-21}, pages = {1-26}, publisher = {Springer, Cham}, abstract = {Melastoma candidum auct. non. D.Don; Melastoma polyanthum Blume. subsp. malabathricum: Medinilla congesta Merr.; Melastoma affine D.Don; Melastoma anoplanthum Naudin; Melastoma articulatum Naudin; Melastoma baumeanum Naudin; Melastoma borneense Bakh.f.; Melastoma brachyodon Naudin; Melastoma candidum D.Don; Melastoma ceramense Naudin; Melastoma congesta Elmer; Melastoma decemdentatum Kostel.; Melastoma denticulatum Labill.; Melastoma ellipticum Naudin; Melastoma fasciculare Naudin; Melastoma francavillanum Cogn,; Melastoma fuscum Merr.; Melastoma heterostegium Naudin; Melastoma holmani Elmer; Melastoma hombronianum Naudin; Melastoma homostegium Naudin; Melastoma jackianum Korth.; Melastoma longiflorum Naudin; Melastoma malabathricum var. grandiflorum Craib.; Melastoma malabathricum var. javanum Bakh.f.; Melastoma malabathricum var. mariannum (Naudin) Fosberg & Sachet; Melastoma mariannum Naudin; Melastoma membranaceum Merr.; Melastoma normale sensu Cogn. ex Winkler; Melastoma novae-hollandiae Naudin; Melastoma obvolutum Jack; Melastoma oliganthum Naudin; Melastoma paleaceum Naudin; Melastoma parviflorum Merr.; Melastoma pelagicum Naudin; Melastoma pinatubense Elmer; Melastoma polyanthum Blume; Melastoma polyanthum var. linearifolium Bakh.f.; Melastoma polyanthum var. mollissimum Bakh.f.; Melastoma polyanthum var. pallens Blume; Melastoma polyanthum var. pulleana Mansf.; Melastoma polyanthum var. riparium Blume; Melastoma punctatum Korth.; Melastoma pusillum Blume; Melastoma pusillum var. longifolium Cogn.; Melastoma robustum Bakh.f.; Melastoma roemeri Mansf.; Melastoma royeni Blume; Melastoma scabrum Ridl.; Melastoma sechellarum Naudin; Melastoma stenophyllum Merr.; Melastoma subgrande Hochr.; Melastoma sylvaticum Blume; Melastoma sylvaticum var. permutiflorum Bakh.f.; Melastoma taitense DC.; Melastoma tidorense Blume; Melastoma tondanense Blume; Melastoma trachycaulon Miq.; Melastoma triflorum Naudin; Melastoma vitiense Naudin; Melastoma warrineri C.B.Rob. subsp. normale (D.Don) Karst.Mey.: Melastoma clarkeanum Cogn.; Melastoma eberhardtii Guillaumin; Melastoma houtteanum Naudin; Melastoma klossi Baker f.; Melastoma malabathricum var. normale (D.Don) R.C.Srivast.; Melastoma microphyllum Naudin; Melastoma normale D.Don; Melastoma normale var. divergens Craib; Melastoma osbeckioides Guillaumin; Melastoma velutinum Seem.; Melastoma wallichii DC.}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } Melastoma candidum auct. non. D.Don; Melastoma polyanthum Blume. subsp. malabathricum: Medinilla congesta Merr.; Melastoma affine D.Don; Melastoma anoplanthum Naudin; Melastoma articulatum Naudin; Melastoma baumeanum Naudin; Melastoma borneense Bakh.f.; Melastoma brachyodon Naudin; Melastoma candidum D.Don; Melastoma ceramense Naudin; Melastoma congesta Elmer; Melastoma decemdentatum Kostel.; Melastoma denticulatum Labill.; Melastoma ellipticum Naudin; Melastoma fasciculare Naudin; Melastoma francavillanum Cogn,; Melastoma fuscum Merr.; Melastoma heterostegium Naudin; Melastoma holmani Elmer; Melastoma hombronianum Naudin; Melastoma homostegium Naudin; Melastoma jackianum Korth.; Melastoma longiflorum Naudin; Melastoma malabathricum var. grandiflorum Craib.; Melastoma malabathricum var. javanum Bakh.f.; Melastoma malabathricum var. mariannum (Naudin) Fosberg & Sachet; Melastoma mariannum Naudin; Melastoma membranaceum Merr.; Melastoma normale sensu Cogn. ex Winkler; Melastoma novae-hollandiae Naudin; Melastoma obvolutum Jack; Melastoma oliganthum Naudin; Melastoma paleaceum Naudin; Melastoma parviflorum Merr.; Melastoma pelagicum Naudin; Melastoma pinatubense Elmer; Melastoma polyanthum Blume; Melastoma polyanthum var. linearifolium Bakh.f.; Melastoma polyanthum var. mollissimum Bakh.f.; Melastoma polyanthum var. pallens Blume; Melastoma polyanthum var. pulleana Mansf.; Melastoma polyanthum var. riparium Blume; Melastoma punctatum Korth.; Melastoma pusillum Blume; Melastoma pusillum var. longifolium Cogn.; Melastoma robustum Bakh.f.; Melastoma roemeri Mansf.; Melastoma royeni Blume; Melastoma scabrum Ridl.; Melastoma sechellarum Naudin; Melastoma stenophyllum Merr.; Melastoma subgrande Hochr.; Melastoma sylvaticum Blume; Melastoma sylvaticum var. permutiflorum Bakh.f.; Melastoma taitense DC.; Melastoma tidorense Blume; Melastoma tondanense Blume; Melastoma trachycaulon Miq.; Melastoma triflorum Naudin; Melastoma vitiense Naudin; Melastoma warrineri C.B.Rob. subsp. normale (D.Don) Karst.Mey.: Melastoma clarkeanum Cogn.; Melastoma eberhardtii Guillaumin; Melastoma houtteanum Naudin; Melastoma klossi Baker f.; Melastoma malabathricum var. normale (D.Don) R.C.Srivast.; Melastoma microphyllum Naudin; Melastoma normale D.Don; Melastoma normale var. divergens Craib; Melastoma osbeckioides Guillaumin; Melastoma velutinum Seem.; Melastoma wallichii DC. |
Mustaqim, Wendy Achmmad; Yus, Reza Raihandhany Murraya paniculata (L.) Jack Rutaceae Book Chapter pp. 1-11, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020m, title = {Murraya paniculata (L.) Jack Rutaceae}, author = {Wendy Achmmad Mustaqim and Reza Raihandhany Yus }, url = {https://link.springer.com/referenceworkentry/10.1007%2F978-3-030-14116-5_167-1#DOI}, doi = {https://doi.org/10.1007/978-3-030-14116-5_167-1}, isbn = {978-3-030-14116-5}, year = {2020}, date = {2020-11-21}, pages = {1-11}, publisher = {Springer, Cham}, abstract = {Connarus foetens Blanco; Connarus santaloides Blanco; Chalcas cammuneng Burm.f.; Chalcas intermedia M.Roem.; Chalcas japanensis Lour.; Chalcas paniculata L.; Chalcas sumatrana M.Roem.; Limonia malliculensis J.R.Forst. ex Steud.; Murraya amoena Salisb.; Murraya banati Elmer; Murraya japonensis (Lour.) Raeusch.; Murraya omphalocarpa Hayata; Murraya ovatifoliolata Domin; Murraya scandens Hassk.; Murraya sumatrana Roxb}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } Connarus foetens Blanco; Connarus santaloides Blanco; Chalcas cammuneng Burm.f.; Chalcas intermedia M.Roem.; Chalcas japanensis Lour.; Chalcas paniculata L.; Chalcas sumatrana M.Roem.; Limonia malliculensis J.R.Forst. ex Steud.; Murraya amoena Salisb.; Murraya banati Elmer; Murraya japonensis (Lour.) Raeusch.; Murraya omphalocarpa Hayata; Murraya ovatifoliolata Domin; Murraya scandens Hassk.; Murraya sumatrana Roxb |
da Silva, Jaime Teixeira A; Wicaksono, Adhityo; Engelmann, Florent Cryopreservation of carnation (Dianthus caryophyllus L.) and other Dianthus species Journal Article Planta, 252 (105), pp. 1-9, 2020, ISSN: 1432-2048. @article{daSilva2020b, title = {Cryopreservation of carnation (Dianthus caryophyllus L.) and other Dianthus species}, author = {Jaime A. Teixeira da Silva and Adhityo Wicaksono and Florent Engelmann}, url = {https://link.springer.com/article/10.1007%2Fs00425-020-03510-2}, doi = {https://doi.org/10.1007/s00425-020-03510-2}, issn = { 1432-2048}, year = {2020}, date = {2020-11-16}, journal = {Planta}, volume = {252}, number = {105}, pages = {1-9}, abstract = {Carnation (Dianthus caryophyllus L.) is an important ornamental plant that is used as a potted plant as well as a cut flower. Important Dianthus germplasm would benefit from long-term strategies such as cryopreservation. Unlike the in vitro tissue culture literature of this ornamental, which has been studied in considerable detail, and with several genetic transformation protocols, surprisingly, the literature on its cryopreservation is still fairly scant, with barely two dozen or so studies, mostly having employed shoot tips. Early (< 2007) and more recent (2007\textendash2020) cryopreservation techniques for carnation, including ultra-rapid cooling, encapsulation-vitrification, and encapsulation-dehydration, efficiently replaced programmed slow cooling processes used in early studies in the 1980s. Two large gaps (1997\textendash2006, and 2016\textendash2020) in which no carnation cryopreservation studies were published, requires future studies to cover new knowledge to fill gaps in information. Carnation cryopreservation research would benefit from testing a wide range of in vitro explants, new techniques such as the cryo-mesh, improved regeneration protocols for post-cryopreserved material, and the use of low-temperature storage as a mid- to long-term complementary germplasm storage strategy. This mini-review provides details of what has been achieved thus far and future objectives that could fortify cryopreservation research of this ornamental, as well as provide a robust long-term germplasm repository.}, keywords = {}, pubstate = {published}, tppubtype = {article} } Carnation (Dianthus caryophyllus L.) is an important ornamental plant that is used as a potted plant as well as a cut flower. Important Dianthus germplasm would benefit from long-term strategies such as cryopreservation. Unlike the in vitro tissue culture literature of this ornamental, which has been studied in considerable detail, and with several genetic transformation protocols, surprisingly, the literature on its cryopreservation is still fairly scant, with barely two dozen or so studies, mostly having employed shoot tips. Early (< 2007) and more recent (2007–2020) cryopreservation techniques for carnation, including ultra-rapid cooling, encapsulation-vitrification, and encapsulation-dehydration, efficiently replaced programmed slow cooling processes used in early studies in the 1980s. Two large gaps (1997–2006, and 2016–2020) in which no carnation cryopreservation studies were published, requires future studies to cover new knowledge to fill gaps in information. Carnation cryopreservation research would benefit from testing a wide range of in vitro explants, new techniques such as the cryo-mesh, improved regeneration protocols for post-cryopreserved material, and the use of low-temperature storage as a mid- to long-term complementary germplasm storage strategy. This mini-review provides details of what has been achieved thus far and future objectives that could fortify cryopreservation research of this ornamental, as well as provide a robust long-term germplasm repository. |
Mustaqim, Wendy A; Yus, Reza Raihandhany; Tamam, Muhammad Badrut Eurycoma longifolia Jack Simaroubaceae Book Chapter pp. 1-14, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020k, title = {Eurycoma longifolia Jack Simaroubaceae}, author = {Wendy A. Mustaqim and Reza Raihandhany Yus and Muhammad Badrut Tamam}, url = {https://link.springer.com/referenceworkentry/10.1007%2F978-3-030-14116-5_162-1}, doi = {https://doi.org/10.1007/978-3-030-14116-5_162-1}, isbn = {978-3-030-14116-5}, year = {2020}, date = {2020-11-08}, pages = {1-14}, publisher = {Springer, Cham}, abstract = {Eurycoma longifolia var. cochinchinensis King; Eurycoma longifolia var. merguensis King; Eurycoma merguensis Planch.; Eurycoma tavoyana Wall.; Manotes asiatica Gagnep.; Picroxylon siamense Warb. subsp. eglandulosa: Eurycoma eglandulosa Merr.}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } Eurycoma longifolia var. cochinchinensis King; Eurycoma longifolia var. merguensis King; Eurycoma merguensis Planch.; Eurycoma tavoyana Wall.; Manotes asiatica Gagnep.; Picroxylon siamense Warb. subsp. eglandulosa: Eurycoma eglandulosa Merr. |
Mustaqim, W A; Putra, Hirmas F Thottea tapanuliensis (Aristolochiaceae): A new species from Sumatra, Indonesia Journal Article Telopea Journal of Plant Systematics, 23 , pp. 163-168, 2020, ISSN: 2200-4025 . @article{Wendy2020hb, title = {Thottea tapanuliensis (Aristolochiaceae): A new species from Sumatra, Indonesia}, author = {W A Mustaqim and Hirmas F. Putra }, url = {https://openjournals.library.sydney.edu.au/index.php/TEL/article/viewFile/14535/13128}, doi = {dx.doi.org/10.7751/telopea14535}, issn = {2200-4025 }, year = {2020}, date = {2020-11-04}, journal = {Telopea Journal of Plant Systematics}, volume = {23}, pages = {163-168}, abstract = {Thottea tapanuliensis Mustaqim (Aristolochiaceae) is described here based on a plant collected from the west coast of northern Sumatra. This species is only known from the type collection and its threat ranking is assessed here as Critically Endangered. Morphological descriptions, photographs, a distribution map, and discussions are provided, as is a key to all Thottea species in Sumatra. }, keywords = {}, pubstate = {published}, tppubtype = {article} } Thottea tapanuliensis Mustaqim (Aristolochiaceae) is described here based on a plant collected from the west coast of northern Sumatra. This species is only known from the type collection and its threat ranking is assessed here as Critically Endangered. Morphological descriptions, photographs, a distribution map, and discussions are provided, as is a key to all Thottea species in Sumatra. |
Mustaqim, Wendy A; Putra, Hirmas F Melothria (Cucurbitaceae): A new genus record of naturalized cucumber in Sumatra Journal Article Floribunda, 6 (5), pp. 183-187, 2020, ISSN: 2460 - 6944. @article{Mustaqim2020cb, title = {Melothria (Cucurbitaceae): A new genus record of naturalized cucumber in Sumatra}, author = {Wendy A. Mustaqim and Hirmas F. Putra}, url = {http://www.ptti.or.id/journal/index.php/Floribunda/article/view/318}, doi = {10.32556/floribunda.v6i5.2020.318}, issn = { 2460 - 6944}, year = {2020}, date = {2020-10-29}, journal = {Floribunda}, volume = {6}, number = {5}, pages = {183-187}, abstract = {The first record of a naturalized cucumber genus Melothria (Cucurbitaceae) is presented for Sumatra, represented by one cosmopolitan species Melothria pendula. The species has been found during an exploration in the northern part of the island. A morphological description, distribution map, brief discussions, and photographs are given. }, keywords = {}, pubstate = {published}, tppubtype = {article} } The first record of a naturalized cucumber genus Melothria (Cucurbitaceae) is presented for Sumatra, represented by one cosmopolitan species Melothria pendula. The species has been found during an exploration in the northern part of the island. A morphological description, distribution map, brief discussions, and photographs are given. |
Lutfiatunnisa, ; Widodo, Maheno Sri; Faqih, Abdul Rahem; Sari, Ledi Diana; Valen, Fitri Sil Molecular approach for identification of Asian seabass (Lates calcarifer Bloch 1790) based on COI gene sequence from Java, Indonesia Journal Article AACL Bioflux, 13 (5), pp. 2828-2833, 2020, ISSN: 1844-8143. @article{Valen2020a, title = {Molecular approach for identification of Asian seabass (Lates calcarifer Bloch 1790) based on COI gene sequence from Java, Indonesia}, author = {Lutfiatunnisa and Maheno Sri Widodo and Abdul Rahem Faqih and Ledi Diana Sari and Fitri Sil Valen }, url = {http://www.bioflux.com.ro/docs/2020.2445-2451.pdf}, issn = {1844-8143}, year = {2020}, date = {2020-10-24}, journal = {AACL Bioflux}, volume = {13}, number = {5}, pages = {2828-2833}, abstract = {Asian seabass or barramundi in Australia, valid as Lates calcarifer (Bloch 1790) is one of the most important food fishes found in tropical and semi-tropical regions of the Indo-West Pacific. This species has been utilized in aquaculture for the past several decades in many countries including Indonesia. In order to support the species success in aquaculture, it is necessary to conduct some research, one of which is species identification for the initial selection of parent candidates by the molecular approach based on the COI gene sequence using the DNA Barcoding method. The two analyzed specimens of Asian seabass from Java, Indonesia were identical to the Lates calcarifer from Australia, with a matching percentage of about 99.83-100% and with 0.000\textendash0.007 genetic distance. }, keywords = {}, pubstate = {published}, tppubtype = {article} } Asian seabass or barramundi in Australia, valid as Lates calcarifer (Bloch 1790) is one of the most important food fishes found in tropical and semi-tropical regions of the Indo-West Pacific. This species has been utilized in aquaculture for the past several decades in many countries including Indonesia. In order to support the species success in aquaculture, it is necessary to conduct some research, one of which is species identification for the initial selection of parent candidates by the molecular approach based on the COI gene sequence using the DNA Barcoding method. The two analyzed specimens of Asian seabass from Java, Indonesia were identical to the Lates calcarifer from Australia, with a matching percentage of about 99.83-100% and with 0.000–0.007 genetic distance. |
Irsyam, Arifin Surya Dwipa; Mustaqim, Wendy A; Irwanto, Rina Ratnasih Phyllanthus emblica L. Phyllanthaceae Book Chapter F., Franco (Ed.): pp. 1-10, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. @inbook{Mustaqim2020g, title = {Phyllanthus emblica L. Phyllanthaceae}, author = {Arifin Surya Dwipa Irsyam and Wendy A. Mustaqim and Rina Ratnasih Irwanto }, editor = {Franco F. }, url = {https://link.springer.com/referenceworkentry/10.1007/978-3-030-14116-5_210-1}, doi = { https://doi.org/10.1007/978-3-030-14116-5_210-1}, isbn = {978-3-030-14116-5}, year = {2020}, date = {2020-10-09}, pages = {1-10}, publisher = {Springer, Cham}, abstract = {Diasperus emblica (L.) Kuntze; Dichelactina nodicaulis Hance; Emblica officinalis Gaertn.; Phyllanthus mairei L\'{e}veill\'{e}}, keywords = {}, pubstate = {published}, tppubtype = {inbook} } Diasperus emblica (L.) Kuntze; Dichelactina nodicaulis Hance; Emblica officinalis Gaertn.; Phyllanthus mairei Léveillé |
2022 |
Biology, 11 (695), pp. 1-14, 2022. |
KAJIAN ETNOKULINER TRADISIONAL LINGGA SEBAGAI PENOPANG PENGEMBANGAN PARIWISATA Journal Article Buletin Kebun Raya, 25 (1), pp. 44-56, 2022. |
Growth of Kaffir Lime (Citrus hystrix DC) Cell Line Derived from Seed Explant After Yeast Elicitation Using Pure and Technical Grade Yeast Journal Article J. Tropical Biodiversity Biotechnology, 7 (1), pp. 1-14, 2022, ISSN: 2540-9581. |
Biological activity of kencur (Kaempferia galanga L.) against SARS-CoV-2 main protease Journal Article International Journal of Health Sciences, 6 (S1), pp. 468–480, 2022. |
Baccaurea Lour. (Phyllanthaceae Martinov-Malpighiales), underutilized plant from Riau, Indonesia and its phytochemical study Journal Article Biodiversitas, 23 (2), pp. 937-946, 2022, ISSN: 2085-4722. |
The Morphologies of Mudskipper Pelvic Fins in Relation to Terrestrial and Climbing Behaviour Journal Article Proceedings of the Zoological Society, 75 , pp. 83–93, 2022. |
J Pharm Pharmacogn Res, 10 (1), pp. 138-146, 2022. |
2021 |
Proceedings of the 5 th International Symposium on Bioinformatics 2021. |
Microplastic Contamination in the Human Gastrointestinal Tract and Daily Consumables Associated with an Indonesian Farming Community Journal Article Sustainability, 13 (12840), pp. 1-10, 2021. |
Concept of SARS-CoV-2 Vaccine Design to Fight COVID-19 Pandemic: A Review Insight Journal Article Indian Journal of Forensic Medicine & Toxicology, 15 (4), pp. 2797-2803, 2021. |
Severe Acute Respiratory Syndrome Coronavirus-2 Emergence and Its Treatment with Alternative Medicines: A Review Journal Article Research Journal of Pharmacy and Technology, pp. 5551-5557, 2021. |
COVID-19 In Silico Drug with Zingiber officinale Natural Product Compound Library Targeting the Mpro Protein Journal Article Makara Journal of Science, 25 (3), pp. 162-171, 2021. |
Kopyor versus macapuno coconuts: are these two edible mutants of Southeast Asia the same? Journal Article Planta, 254 (86), 2021. |
Int. J. Aquat. Biol., 9 (4), pp. 244-247, 2021, ISSN: 2322-5270. |
Haplotype Network Analysis and Phylogenetic Tree Construction of Hepatitis C Virus (HCV) Isolated from Tuban, Indonesia Journal Article Research J. Pharm. and Tech. , 14 (8), pp. 4231-4235, 2021, ISSN: 0974-3618 . |
Medicinal properties of Muntingia calabura L.: A Review Journal Article Research J. Pharm. and Tech. , 14 (8), pp. 4505-4508, 2021, ISSN: 0974-3618 . |
Jurnal Mikologi Indonesia, 5 (1), pp. 7-15, 2021, ISSN: 2579-8766. |
Biochem. Cell. Arch., 21 (2), pp. 3323-3327, 2021, ISSN: 0972-5075. |
Xenobiology: An expanded semantical review Journal Article Notulae Scientia Biologicae, 13 (10929), pp. 1-14, 2021. |
Promoter analysis of the SPATULA (FvSPT) and SPIRAL (FvSPR) genes in the woodland diploid strawberry (Fragaria vesca L.) Journal Article Biologia Futura, 2021, ISSN: 2676-8607. |
Rhizanthes, the Forgotten Relative of Rafflesia in the Rafflesiaceae Journal Article The Botanical Review, 2021. |
Retrieval and Investigation of Data on SARS-CoV-2 and COVID-19 Using Bioinformatics Approach Book Chapter Springer, Cham, 2021, ISBN: 978-3-030-63761-3. |
Range expansion of Oreochromis niloticus (Linnaeys, 1758) (Perciformes, Chichlidae) in Java Sea and first record for Masalembo Island Journal Article IOP Conf. Series: Earth and Environmental Science , 718 , 2021. |
Philippine Journal of Science, 150 (5), pp. 1141-1152, 2021, ISSN: 0031-7683. |
Alstonia macrophylla (Apocynaceae): A New Record of Naturalized Species in Java, Indonesia. Journal Article Floribunda, 6 (6), pp. 207-212, 2021, ISSN: 2460 - 6944. |
Journal of Pharmacy & Pharmacognosy Research, 9 (4), pp. 484-496, 2021, ISSN: 0719-4250. |
The term “caline” in plant developmental biology Journal Article Biologia Futura, 2021. |
Tea catechin as antiviral agent via apoptosis agonist and triple inhibitor mechanism against HIV-1 infection: A bioinformatics approach Journal Article Journal of Pharmacy & Pharmacognosy Research, 9 (4), pp. 435-445, 2021, ISSN: 0719-4250. |
Introduction to Ethnobotany of the Mountain Regions of Southeast Asia Book Chapter pp. 1-26, Springer, Cham, 2021, ISBN: 030-14116-5_208-1. |
Presence of the vulnerable freshwater goby Sicyopus auxilimentus (Gobiidae, Sicydiinae) on Sangihe Island, Indonesia Journal Article Biodiversitas, 22 (2), pp. 571-579, 2021, ISSN: 2085-4722 . |
Phylogeny and estimated genetic divergence times of banana cultivars (Musa spp.) from Java Island by maturase K (matK) genes Journal Article Bulletin of the National Research Centre, 45 (33), pp. 1-13, 2021, ISSN: 2522-8307. |
Research Journal of Pharmacy and Technology, 14 (1), pp. 455-460, 2021, ISSN: 0974-360X. |
Amphibian Diversity in the Waterfall of Lubuklinggau City, South Sumatra Journal Article Biota, 7 (1), pp. 10-16, 2021, ISSN: 2460-7746. |
Revealing Potency of Bioactive Compounds as Inhibitor of Dengue Virus (DENV) NS2B/NS3 Protease from Sweet Potato (Ipomoea batatas L.) Leaves Journal Article Indian Journal of Forensic Medicine and Toxicology, 15 (1), pp. 1627-1632, 2021, ISSN: 0973-9130. |
Chloranthus elatior Link Chloranthaceae Book Chapter F., Franco (Ed.): pp. 1-5, Springer, Cham, 2021, ISBN: 978-3-030-14116-5. |
Eco. Env. & Cons, 27 (1), pp. 168-171, 2021. |
2020 |
Passiflora foetida L. Passifloraceae Book Chapter pp. 1-10, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. |
A new species of Syzygium (Myrtaceae) from the Bird’s Head Peninsula, western New Guinea Journal Article Telopea Journal of Plant Systematics, 23 , pp. 221–225, 2020, ISSN: 2200-4025. |
Inventarisasi Keanekaragaman Spesies Tumbuhan Bawah di Kawasan Agrowisata Pangjugjugan, Desa Cilembu, Sumedang Journal Article BIOTIKA Jurnal Ilmiah Biologi, 18 (2), pp. 9-24, 2020, ISSN: 2621-4180. |
Platostoma palustre (Blume) A.J.Paton Lamiaceae Book Chapter F., Franco (Ed.): pp. 1-5, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. |
Jenis-Jenis Tumbuhan Parasit dan Persebarannya di Institut Teknologi Bandung (ITB) Kampus Ganesha Journal Article Jurnal Sumberdaya HAYATI, 6 (2), pp. 47-55, 2020, ISSN: 2477-037X. |
A Plant within a Plant: Insights on the Development of the Rafflesia Endophyte within its Host Journal Article The Botanical Review , 2020, ISSN: 0006-8101. |
Melastoma malabathricum L. Melastomataceae Book Chapter F., Franco (Ed.): pp. 1-26, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. |
Murraya paniculata (L.) Jack Rutaceae Book Chapter pp. 1-11, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. |
Cryopreservation of carnation (Dianthus caryophyllus L.) and other Dianthus species Journal Article Planta, 252 (105), pp. 1-9, 2020, ISSN: 1432-2048. |
Eurycoma longifolia Jack Simaroubaceae Book Chapter pp. 1-14, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. |
Thottea tapanuliensis (Aristolochiaceae): A new species from Sumatra, Indonesia Journal Article Telopea Journal of Plant Systematics, 23 , pp. 163-168, 2020, ISSN: 2200-4025 . |
Melothria (Cucurbitaceae): A new genus record of naturalized cucumber in Sumatra Journal Article Floribunda, 6 (5), pp. 183-187, 2020, ISSN: 2460 - 6944. |
Molecular approach for identification of Asian seabass (Lates calcarifer Bloch 1790) based on COI gene sequence from Java, Indonesia Journal Article AACL Bioflux, 13 (5), pp. 2828-2833, 2020, ISSN: 1844-8143. |
Phyllanthus emblica L. Phyllanthaceae Book Chapter F., Franco (Ed.): pp. 1-10, Springer, Cham, 2020, ISBN: 978-3-030-14116-5. |